66 kDa antigen from Borrelia

ABSTRACT

The present invention relates to nucleic acid molecules, polypeptides encoded by the same, antibodies directed thereto and a method of preparing such polypeptides including: (a) inserting an isolated DNA molecule coding for a polypeptide which is immunoreactive with a 66 kDa polypeptide derived from Borrelia garinii IP90 into an expression vector; (b) transforming a host organism or cell with the vector; (c) culturing the transformed host cell under suitable conditions; and (d) harvesting the polypeptide. The isolated DNA molecule is preferably at least 10 nucleotides in length, and the method may optionally include subjecting the polypeptide to post-translational modification. The host cell can be a bacterium, a yeast, a protozoan, or a cell derived from a multicellular organism such as a fungus, an insect cell, a plant cell, or a mammalian cell.

CROSS-REFERENCE TO RELATED APPLICATIONS

The present application is a continuation-in-part of U.S. application Ser. No. 08/079,601, filed Jun. 22, 1993, now U.S. Pat. No. 5,523,089, which is a continuation of U.S. application Ser. No. 07/924,798, filed Aug. 6, 1992, now abandoned, which is a continuation of U.S. application Ser. No. 07/422,881, filed Oct. 18, 1989, now abandoned, which claims priority from Danish application 5902/88, filed Oct. 24, 1988.

FIELD OF THE INVENTION

The present invention relates to nucleic acid fragments encoding antigenic proteins associated with Borrelia burgdorferi sensu lato (Borrelia burgdorferi sensu stricto, Borrelia garinii, and Borrelia afzelii; denoted Bb herein), particularly polypeptides associated with virulence of the bacteria. The invention also relates to methods for producing Bb immunogenic polypeptides and corresponding antibodies. Other embodiments of the invention relate to compositions and methods for detecting Lyme disease and also vaccines against infections with Borrelia burgdorferi sensu lato are a part of the invention as is methods of immunizing animals against diseases caused by these infections. Vectors and transformed cells comprising Bb-associated nucleic acids are also included.

DESCRIPTION OF RELATED ART

Lyme disease is a multisystem disease resulting from tick transmission of the infectious agent, Bb (Rahn and Malawista, 1991). Although recognized as a clinical entity within the last few decades (Steere et al., 1977), case reports resembling Lyme disease date back to the early part of the 20th century. Cases of the disease have been reported in Europe, Asia and North America (Schmid, 1985). Despite a relatively low total incidence compared to other infectious diseases, Lyme disease represents a significant health problem because of its potentially severe cardiovascular, neurologic and arthritic complications, difficulty in diagnosis and treatment and high prevalence in some geographic regions.

Bb is not a homogeneous group but has a variable genetic content, which may in turn affect its virulence, pattern of pathogenesis and immunogenicity. Lyme borreliosis associated borreliae are so far taxonomically placed into three species, Borrelia burgdorferi sensu stricto, Borrelia garinii, and Borrelia afzelii (Burgdorfer et al. 1983, Baranton et al. 1992, Canica et al. 1993). It is well documented that considerable genetic, antigenic and immunogenic heterogeneity occurs among them, as well as among the strains within the separate species (Baranton et al. 1992, Canica et al. 1993, Zingg et al. 1993, Wilske et al. 1993, Adam et al. 1991, Marconi and Garon 1992). The major evidence of this phenomenon is provided by the molecular studies of the plasmid-encoded outer surface protein A (OspA), B (OspB), and C (OspC) (Barbour et al. 1984, Jonsson et al. 1992, Wilske et al. 1993, Marconi et al. 1993). In different animal models efficient protection is achieved by passive and active immunization with OspA (Simon et al., 1991 Fikrig et al., 1992, Erdile et al., 1993), therefore, OspA remains one of the main candidates for Borrelia vaccine. It is unclear, however, whether inter- and intra-species heterogeneity of OspA, as well as other competitors for immunoprophylaxis, allow efficient cross-protection (Fikrig et al. 1992, Norris et al., 1992). Furthermore, it was recently suggested that certain protective antibodies produced early in the course of Borrelia infection is unrelated to OspA (Norton Hughes et al., 1993, Barthold and Bockenstedt, 1993).

Its virulence factors, pathogenetic mechanisms and means of immune evasion are unknown. At the level of patient care, diagnosis of the disease is complicated by its varied clinical presentation and the lack of practical, standardized diagnostic tests of high sensitivity and specificity. Antimicrobial therapy is not always effective, particularly in the later stages of the disease.

Variation among Bb strains and species and the changes resulting from in vitro passage add to the problems of developing vaccines or immunodiagnostics from either the whole organism or specifically associated proteins. Using a PCR assay, it was found that one set of oligonucleotide primers was specific for North American Bb isolates, another for most European isolates and a third set recognized all Bb strains (Rosa et al., 1989).

Serological assays for the diagnosis and detection of Lyme disease are thought to offer the most promise for sensitive and specific diagnosis. However, serologic assays generally use whole Bb as antigen and suffer from a low "signal to noise" ratio, i.e., a low degree of reactivity in positive samples, particularly early in the disease, as compared to negative samples. This problem results in high numbers of false negatives and the potential for false positives. Background reactivity in negative controls may be due in part to conserved antigens such as the 41K flagellin and the 60K "Common Antigen". These Bb proteins possess a high degree of sequence homology with similar proteins found in other bacteria. Therefore normal individuals will often express anti-flagellar and anti-60K antibodies. Unique, highly reactive Bb antigens for serological assays are therefore desirable but heretofore unavailable.

Diagnosis of Lyme disease remains a complex and uncertain endeavour, due to lack of any single diagnostic tool that is both sensitive and specific. Clinical manifestations and history are the most common bases for diagnosis. However, there is a pressing need for specific, sensitive, reproducible and readily available confirmatory tests. Direct detection offers proof of infection but is hampered by the extremely low levels of Bb that are typically present during infection, as well as the inaccessibility of sites that tend to be consistently positive (e.g., heart and bladder). Culture, although sensitive, is cumbersome and requires 1-3 weeks to obtain a positive result. PCR appears to offer promise in terms of direct detection (Lebech et al., 1991) and indeed Goodman et al (1991) have reported detection of Bb DNA in the urine of patients with active Lyme disease using a PCR method. However, it is unlikely that PCR assays will become commonly used in clinical laboratories because of the degree of skill required for its use and the high risk of DNA contamination.

Another problem in detection of Lyme disease is the substantial number of humans exposed to Bb who develop unapparent or asymptomatic infections. This number has been estimated as high as 50% (Steere et al., 1986). There is clearly a need for means of preparing Bb-specific antigens, e.g., for the development of diagnostic tests for Lyme disease or vaccines against Lyme disease. Adequate assays do not exist and should ideally meet several criteria, including (1) expression of an antigen by all pathogenic Bb strains, (2) elicitation of an immune response in all Lyme disease patients, (3) high immunogenicity with a detectable antibody response early in the infection stage, (4) antigens unique to Bb without cross reactivity to other antigens and, (5) distinction between individuals exposed to nonpathogenic as opposed to pathogenic forms of Bb.

Problems similar to those relating to diagnosis exist when attempting to prepare a vaccine against diseases caused by Bb. Successful single antigen vaccines have until now not been prepared, possibly due to the inter-strain and inter-species antigenic variation. As mentioned above, OspA has been the main candidate for the immunogenic constituent of a single antigen vaccine, but time has proven that in order for such a vaccine to be efficient it has to contain OspA from at least three different Bb species (Borrelia burgdorferi sensu stricto, Borrelia garinii, and Borrelia afzelii).

A number of investigators have reported the presence of proteins with molecular weights in the region between 60 and 75 kDa. Many of these proteins are also recognised by antibodies in patient sera when analyzed by Western blots. (Barbour 1984, Luft et al., 1989). Protease treatment of Borrelia burgdorferi cells (Barbour et al. 1984) showed that a minor protein with a apparent molecular weight of 66 kDa was accessible to proteolytic cleavage, and hence probably associated with the outer envelope. Coleman and Benach (1987) isolated a protein with apparent molecular weight of 66 kDa from an outer envelope fraction isolated from Borrelia burgdorferi B31. However, direct amino acid sequencing of Bb proteins with the apparent molecular weights 66-, 68-, 71-, and 73-kDa revealed these proteins to have high sequence similarity with the E. coli heat-shock proteins (Luft et al., 1991) making them less suitable for the use in prophylaxis and serodiagnosis.

SUMMARY OF THE INVENTION

The inventors have surprisingly found that an antigen from Bb with an apparent molecular weight of 66 kDa (determined by SDS-PAGE, and staining with Coomassie Blue) is highly conserved in the three strains B. burgdorferi sensu stricto B31, B. garinii IP90, and B. afzelii ACAI, whereas this antigen cannot be found in Borrelia species related to relapsing fever and avian borreliosis. The disclosed antigens therefore are excellent candidates for vaccines and diagnostics relating to infections with Bb.

Thus, the present invention addresses one or more of the foregoing or other problems associated with the preparation and use of Bb specific antigens, particularly those antigens which are associated with virulence and which are useful for developing detection and diagnostic methods for Lyme disease as well as vaccines against Lyme disease. The invention involves the identification of such antigens, as well as the identification and isolation of Bb nucleic acid sequences that encode Bb antigens or antigenic polypeptides derived therefrom. These sequences are useful for preparing expression vectors for transforming host cells to produce recombinant antigenic polypeptides. It is further proposed that these antigens will be useful as vaccines or as immunodiagnostic agents for Bb associated diseases such as Lyme disease in particular.

The DNA disclosed herein was isolated from the bacteria Borrelia burgdorferi sensu lato hereafter designated as Bb. The microorganism is a spiral-shaped organism approximately 0.2 micron in diameter and ranging in length from about 10-30 microns. Like other spirochetes, it possesses an inner membrane, a thin peptidoglycan layer, an outer membrane, and periplasmic flagella which lie between the inner and outer membranes. Bb is obligate parasite found only in association with infected animals and arthropod vectors in endemic areas. Bb-like organisms have also been identified in birds raising the possibility that birds could also serve as an animal reservoir. While some Bb isolates have been cloned, most isolates have not been cloned and most likely represent mixtures of different variants even at the time of culture origination.

Bb has similarities with other relapsing fever organisms such as B. hermsii. B has a single chromosome with two unusual features, linear conformation and small size (approximately 900 kilobase pairs). Fresh isolates of Bb contain up to four linear plasmids and six circular supercoiled plasmids. The plasmid content of different Bb isolates is highly variable. For example, in one study only two of thirteen strains had similar plasmid profiles. Some plasmids are lost during in vitro passage which may correlate with loss of virulence. outer surface proteins OspA and OspB are encoded on the 49 kbp linear plasmid. The 66 kDa membrane-associated proteins discovered by the inventors are encoded on the Bb chromosome.

In order to identify DNA segments encoding the 66 kDa proteins, purified protein was isolated from B. afzelii ACAI, by preparative SDS-PAGE for subsequent use in amino acid sequencing. The peptide was transferred to polyvinylene diffusable membranes, sequence analysis was performed using standard sequencing techniques (Matsudaira, 1987). An 8 amino acid sequence was identified (SEQ ID NO: 1). Codons for the amino acid sequence were selected by reverse translation based on (1) conclusion that codons containing A or T were favoured and (2) knowledge of published DNA sequences for several Bb proteins. A choice favouring A or T containing codons was based on the observation that the G+C content of Bb is only 28-35w (Burman et al. 1990). A 24 nucleotide segment was synthesized having the structure in SEQ ID NO: 2 (corresponding to amino acids 6-13):

5'-GAA AAA GAT ATW TTT AAA ATW AAT-3'

wherein W denotes the bases A or T, i.e. the 24 nucleotide segment exists in 4 variants.

DNA libraries were prepared by restriction enzyme digestion of DNA prepared from B. burgdorferi B31, B. afzelii ACAI and B. garinii Ip90.

The 24 residue oligonucleotide probe was used as a probe to screen the DNA library prepared from B. garinii Ip90 to identify DNA encoding the 66 kDa protein isolated from this Bb species.

A 592 bp DNA fragment coding for part of the 66 kDa protein from B. garinii Ip90 was used as a probe to screen DNA libraries prepared from B. burgdorferi B31 and B. afzelii ACAI to identify DNA encoding the 66 kDa protein from these Bb species.

Antigenicity of the 66 kDa protein was determined. Antiserum collected from rabbits injected with the 66 kDa protein prepared from B. garinii Ip90 was shown to react with the 66 kDa proteins, as detected on immunoblots of B. garinii Ip90 as well as B. burgdorferi B31 and B. afzelii ACAI. No reactive spots were detected in normal rabbit serum. This result should lead to straightforward production of monoclonal antibodies reactive with the 66 kDa polypeptides from one strain of one species exclusively as well as from two or all three species. Antibodies could be produced and used for screening strains for protein expression, for determining structural location and for examining bactericidal activity of antibodies against these proteins.

The nucleic acid segments of the present invention thus encode amino acid sequences associated with Bb. Some of these amino acid sequences are antigenic. The nucleic acid sequences are also important for their ability to selectively hybridize with complementary stretches of Bb gene segments.

Varying conditions of hybridization may be desired, depending on the application envisioned and the selectivity of the probe toward the target sequence. Where a high degree of selectivity is desired, one may employ relatively stringent conditions to form the hybrids, such as relatively low salt and/or high temperature conditions. Under these conditions, little mismatch between the probe and template or target strand is tolerated. Less stringent conditions might be employed where, for example, one desires to prepare mutants or to detect mutants when significant divergence exists.

In clinical diagnostic embodiments, nucleic acid segments of the present invention may be used in combination with an appropriate means, such as a label, to determine hybridization with DNA of a pathogenic organism. Typical methods of detection might utilize, for example, radioactive species, enzyme-active or other marker ligands such as avidin/biotin, which are detectable directly or indirectly. In preferred diagnostic embodiments, one will likely desire to employ an enzyme tag such as alkaline phosphatase or peroxidase rather than radioactive or other reagents that may have undesirable environmental effects. Enzyme tags, for example, often utilize colorimetric indicator substrates that are readily detectable spectrophotometrically, many in the visible wavelength range. Luminescent substrates could also be used for increased sensitivity.

Hybridizable DNA segments may include any of a number of segments of the disclosed DNA. For example, relatively short segments including 12 or so base pairs may be employed, or, more preferably when probes are desired, longer segments including 20, 30 or 40 base pairs, depending on the particular applications desired. Shorter segments are preferred as primers in such applications as PCR, while some of the longer segments are generally preferable for blot hybridizations. It should be pointed out, however, that while sequences disclosed for the DNA segments of the present invention are defined by SEQ ID NO: 3, SEQ ID NO: 5 and SEQ ID NO: 7, and SEQ ID NO: 13, a certain amount of variation or base substitution would be expected, e.g., as may be found in mutants or strain variants, but which do not significantly affect hybridization characteristics. Such variations, including base modifications occurring naturally or otherwise, are intended to be included within the scope of the present invention.

While the 66 kDa Bb antigen has been disclosed in terms of specific amino acid sequences from three strains of Bb, it is nonetheless contemplated that the amino acid sequence will be found to vary even further from species to species and isolate to isolate. Moreover, it is quite clear that changes may be made in the underlying amino acid sequence through e.g., site-directed mutagenesis of the DNA coding sequence, in a way that will not negate its antigenic capability.

The invention also relates to at least partially purified antigenic Bb proteins or polypeptides capable of eliciting an in vivo immunogenic response in animals which are later challenged with Bb. These proteins may comprise all or part of the amino acid sequence encoded by the herein disclosed DNA. Particularly preferred antigenic proteins have the amino acid sequence shown in SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, and SEQ ID NO: 14. These proteins, as well as their epitopes, will be useful in connection with vaccine development, and as antigen(s) in immunoassays for detection of Bb antibodies in biological fluids such as serum, seminal or vaginal fluids, urine, saliva, body exudates and the like.

In other aspects, the invention concerns recombinant vectors such as plasmids, phage or viruses, which comprise DNA segments in accordance with the invention, for use in replicating such sequences or even for the expression of encoded antigenic peptides or proteins. Vectors or plasmids may be used to transform a selected host cell. In preparing a suitable vector for transforming a cell, desired DNA segments from any of several Bb sources may be used, including genomic fragments, cDNA or synthetic DNA. In practice of the present invention, an expression vector may incorporate at least part of the DNA sequence of SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, and SEQ ID NO: 13 encoding one or more epitopic segments of the disclosed 66 kDa antigens.

Expression vectors may be constructed to include any of the DNA segments disclosed herein. Such DNA might encode an antigenic protein specific for virulent strains of Bb or even hybridization probes for detecting Bb nucleic acids in samples. Longer or shorter DNA segments could be used, depending on the antigenic protein desired. Epitopic regions of the 66 kDa proteins expressed or encoded by the disclosed DNA could be included as relatively short segments of DNA. A wide variety of expression vectors is possible including, for example, DNA segments encoding reporter gene products useful for identification of heterologous gene products and/or resistance genes such as antibiotic resistance genes which may be useful in identifying transformed cells.

Recombinant vectors such as those described are particularly preferred for transforming bacterial host cells. Accordingly, a method is disclosed for preparing transformed bacterial host cells that includes generally the steps of selecting a suitable bacterial host cell, preparing a vector containing a desired DNA segment and transforming the selected bacterial host cell. Several types of bacterial host cells may be employed, including Bb, E. coli, B. subtilis, and the like as well as prokaryotic host cells.

Transformed cells may be selected using various techniques, including screening by differential hybridization, identification of fused reporter gene products, resistance markers, anti-antigen antibodies and the like. After identification of an appropriate clone, it may be selected and cultivated under conditions appropriate to the circumstances, as for example, conditions favouring expression or, when DNA is desired, replication conditions.

Another aspect of the invention involves the preparation of antibodies and vaccines from the antigenic 66 kDa proteins or epitopic regions of that protein encoded by the disclosed DNA. The invention thus relates to one or more antibodies, monoclonal or polyclonal, that may be generated in response to the 66 kDa Bb proteins or their epitopes. It is expected that the sensitivity and specificity of antibody response to this 66 kDa proteins and their epitopes will be superior to the response that has been obtained from other Bb antigens that are not associated with virulence. Previous work with several Bb antigens isolated from both virulent and avirulent strains indicated low sensitivity when immunofluorescence and ELISA assays were employed, especially during early stages of infection.

In both immunodiagnostics and vaccine preparation, it is often possible and indeed more practical to prepare antigens from segments of a known immunogenic protein or polypeptide. Certain epitopic regions may be used to produce responses similar to those produced by the entire antigenic polypeptide. Potential antigenic or immunogenic regions may be identified by any of a number of approaches, e.g., Jameson-Wolf or Kyte-Doolittle antigenicity analyses or Hopp and Woods (1981) hydrophobicity analysis (see, e.g., Jameson and Wolf, 1988; Kyte and Doolittle, 1982; or U.S. Pat. No. 4,554,101). Hydrophobicity analysis assigns average hydrophilicity values to each amino acid residue from these values average hydrophilicities can be calculated and regions of greatest hydrophilicity determined. Using one or more of these methods, regions of predicted antigenicity may be derived from the amino acid sequence assigned to the 66 kDa polypeptide. Regions from the 66 kDa antigens having a high likelihood of being epitopes include the sequences corresponding to positions 175-190, 285-305, 365-385, and 465-490.

It is contemplated that the antigens and immunogens of the invention will be useful in providing the basis for one or more assays to detect antibodies against Bb. Previous assays have used whole Bb as the antigen. Sera from normal individuals not exposed to Bb often contain antibodies that react with Bb antigens, in particular antigens that have epitopes in common with other bacteria. It is necessary to adjust assay conditions or the diagnostic threshold of reactivity to avoid false positive reactions due to these cross-reactive antibodies in normal sera. These adjustments may in turn decrease the sensitivity of the assay and lead to false negative reactions, particularly in the early stages of Bb infection. Assays using the disclosed 66 kDa proteins or antigenic polypeptides thereof, are expected to give superior results both in sensitivity and selectivity when compared to assays that use whole Bb or even purified flagella in either an indirect ELISA or an antibody capture ELISA format. Western immunoblots based on reactions with such antigens (whole Bb, flagella and the like) have been difficult to interpret due to the presence of antibodies in sera from unexposed individuals. These antibodies cross react with Bb antigens, most particularly the 41 kDa flagellin and the 60 kDa common antigen protein. Generally, assays which use whole organisms or purified flagella tend to contain antigens with epitopes that will cross react with other bacterial antigens. For example, the N and C terminal regions of the Bb flagellin possess 52-55% sequence identity with the Salmonella typhimurium and Bacillus subtilis sequences (Wallich et al., 1990), exemplifying the highly conserved nature of flagellin structure. The 60 kDa Bb protein is likewise 58 homologous with the E. coli protein (Shanafelt et al., 1991). Such cross reactivity is not likely with the 66 kDa antigen, which is apparently unique to Bb.

It is further anticipated that a recombinant derived 66 kDa Bb protein will be particularly preferred for detecting Bb infections. Unexposed individuals should have a low reactivity to one or more epitopes of the 66 kDa proteins thereby making it possible to use lower dilutions of serum and increase sensitivity. Using a combination of more than one of these unique antigens may also enhance sensitivity without sacrificing specificity.

Preferred immunoassays are contemplated as including various types of enzyme linked immunoassays (ELISAS), immunoblot techniques, and the like, known in the art. However, it readily appreciated that utility is not limited to such assays, and useful embodiments include RIAs and other nonenzyme linked antibody binding assays or procedures.

Yet another aspect of the invention is a method of detecting Bb nucleic acid in a sample. The presence of Bb nucleic acid in the sample may be indicated by the presence of the polypeptide products which it encodes. The method therefore includes detecting the presence of at least a portion of any of the polypeptides herein disclosed. Suitable detection methods include, for example, immunodetection reagents, PCR amplification, and hybridization.

Yet another aspect of the invention includes one or more primers capable of priming amplification of the disclosed DNA of SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, and SEQ ID NO: 13. Such primers are readily generated taking into account the base sequence of the DNA segment of SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, and SEQ ID NO: 13, the disclosed DNA, or deriving a base sequence from the amino acid sequence of a purified polypeptide encoded by the DNA. Primers are analogous to hybridization probes, but are generally relatively short DNA segments, usually about 7-20 nucleotides.

Methods of diagnosing Lyme disease are also included in the invention. In one embodiment, an antibody-based method includes obtaining a sample from a patient suspected of having Lyme disease, exposing that sample to one or more epitopes of the Bb protein which is encoded by the DNA disclosed and finally determining a reactivity of the antibody with one or more epitopes of a Bb protein that may be in the sample. The reactivity measured is indicative of the presence of Lyme disease. Typical samples obtainable from a patient include human serum, plasma, whole blood, cerebrospinal fluid, seminal or vaginal fluids, exudates and the like.

Several variations of antibody-based methods are contemplated for development; for example, an indirect ELISA using the 66 kDa proteins or other Bb proteins as an antigen. The 66 kDa proteins may be produced in large quantities by recombinant DNA vectors already disclosed and purified. Optimal concentration of the antigen could be determined by checker board titration and diagnostic potential of the 66 kDa proteins assay examined further by testing serum from mice at different stages of infection and infected with different strains of Bb. These results could indicate the relative time course for sera conversion for each of the assays and would also show whether infection with different strains causes variation in anti-66 kDa protein titers.

Likewise, reactive epitopes of the 66 kDa polypeptides are contemplated as useful either as antigens in an ELISA assay or to inhibit the reaction of antibodies toward intact 60 kDa proteins bound to a well. Epitopic peptides could be generated by recombinant DNA techniques previously disclosed or by synthesis of peptides from individual amino acids. In either case, reaction with a given peptide would indicate presence of antibodies directed against more epitopes. In addition to its diagnostic potential, this method is seen as being particularly effective in characterizing monoclonal antibodies against the 66 kDa proteins and other virulence associated proteins.

In further aspects, the present invention concerns a kit for the detection of Bb antigens, the kit including, alternatively, an antibody reactive with 66 kDa antigenic proteins or a protein or peptide which includes an epitope thereof, together with means for detecting a specific immunoreaction between an antibody and its corresponding antigen. Examples of suitable means include labels attached directly to the antigen or antibody, a secondary antibody having specificity for human Ig, or protein A or protein G. Alternatively, avidin-biotin mediated Staphylococcus aureus binding could be used. For example, the monoclonal antibody may be biotinylated so as to react with avidin complexed with an enzyme or fluorescent compound.

A particular kit embodiment of the invention concerns detection of antibodies against the described Bb 66 kDa antigens, epitopes thereof as represented by portions of the amino acid sequences, or closely related proteins or peptides, such as epitopes associated with other virulence-associated proteins detected by comparison of low-passage, virulent and high-passage, avirulent strains of Bb. The antigen for the kit (s) consists of the Bb 66 kDa proteins or portions thereof produced by a recombinant DNA vector in E. coli or another bacterial or nonbacterial host. Alternatively, the antigen may be purified directly from Bb or manufactured as a synthetic peptide. Samples for the assays may be body fluids or other tissue samples from humans or animals. The presence of reactive antibodies in the samples may be demonstrated by antibody binding to antigen followed by detection of the antibody-antigen complex by any of a number of methods, including ELISA, RIA, fluorescence, agglutination or precipitation reactions, nephelometry, or any of these assays using avidin-biotin reactions. The degree of reactivity may be assessed by comparison to control samples, and the degree of reactivity used as a measure of present or past infection with Bb. The assay(s) could also be used to monitor reactivity during the course of Lyme disease, e.g., to determine the efficacy of therapy.

In still further embodiments, the invention contemplates a kit for the detection of Bb nucleic acids in the sample, wherein the kit includes one or more nucleic acid probes specific for the 66 kDa genes, together with means for detecting a specific hybridization between such a probe and Bb nucleic acid, such as an associated label.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

Hence, the invention relates to an isolated nucleic acid fragment comprising a nucleotide sequence which

encodes a polypeptide exhibiting a substantial immunological reactivity with a rabbit antiserum raised against a 66 kDa polypeptide derived from Borrelia garinii IP90, said rabbit antiserum exhibiting substantially no immunological reactivity with whole cell preparations (prepared as described herein) from at least 95% of randomly selected Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica.

By the term "nucleic acid fragment" as used herein is meant a fragment of DNA or RNA, but also of PNA (cf. Nielsen P E et al., 1991) having a length of at least two joined nucleotides. It will be understood, that although the disclosed nucleic acid fragments of the present invention are DNA fragments, it may be desirable to employ a RNA fragment in e.g. a viral vector, the genome of which is natively composed of RNA. For the purposes of preparing e.g. probes for hybridization assays as described below, PNA fragments may prove useful, as these artificial nucleic acids have been demonstrated to exhibit very dynamic hybridization properties.

The term "a substantial immunological reactivity" is meant to designate a marked immunological binding between an antibody/antiserum on the one hand, and on the other an antigen, under well-defined conditions with respect to physicochemical parameters as well as concentrations of antigens and antibodies. Thus, a substantial immunological reactivity should be clearly distinguishable from a non-specific interaction between an antibody/antiserum and an antigen: This distinction can for instance be made by reacting the antibody/antiserum with a known concentration of an antigen which has previously been shown not to react with the antibody/antiserum, and then using this reaction as a negative control. A positive control could suitably be the reaction between the antibody/antiserum and the same concentration of the antigen used for the immunisation resulting in the production of the antibody/antiserum. In such an assay, an antigen resulting in a relative signal of at least 10% (calculated as S_(m) ·(S_(p) -S_(n))·100, where S_(m) is the measured signal, S_(p) the positive control signal, an S_(n) the negative control signal) is regarded as having a substantial immunological reactivity. An antigen exhibiting "substantially no immunological reactivity" therefore is defined as an antigen giving a signal of at the most 10%.

Although the data presented herein demonstrates that there is no cross-reactivity between antigens from Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica and the disclosed polypeptides, it is conceivable that a few isolates of these bacteria will exhibit some cross-reactivity. As can be deduced from the above it is expected that the cross-reactivity will be less than 5% (since there is no reactivity with at least 95% of randomly chosen Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica), and according to the invention this cross-reactivity may be even lower, such as at the most 4% and 3%, preferably at the most 2%, such as 1%. According to the invention the cross-reactivity is most preferred at most 1/2%, such as 0%. In such a case there will be no substantial immunological reactivity between the rabbit antiserum mentioned above and whole cell preparations of Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica.

The above-cited considerations concerning cross-reactivity apply for all cross-reactions between on the one hand the polypeptides/DNA fragments of the invention and on the other hand material from Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, and Borrelia hispanica.

When using the term "cross-reactivity" is herein meant the phenomenon that two species exhibit a common feature which is detected in a reaction. In the present context the term cross-reactivity is used for similar reactions in antigen-antibody interactions as well as in hybridization interactions.

Nucleic acid fragments of the invention useful as hybridisation probes and/or primers are not necessarily those fragments encoding immunologically useful polypeptides. Therefore the invention also relates to nucleic acid fragments which

hybridises readily with either a DNA fragment having the nucleotide sequence SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, or SEQ ID NO: 13 or with a DNA fragment complementary thereto, but exhibits no substantial hybridization with genomic DNA from at least 95% of randomly selected Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica when the hybridization conditions are highly stringent.

Preferred nucleic acids of the invention are DNA fragments, especially those which have nucleotide sequences with a sequence homology of at least 70% with SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, or SEQ ID NO: 13 or subsequences thereof. However, the degree of homology may be even higher such as at least 75%, 80%, 85%, 87%, and 89%. It is preferred that the degree of homology is at least 90%, such as 92%, 94% or 95%, and especially preferred are DNA fragments with a sequence homology of at least 96% with SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, or SEQ ID NO: 13. Especially for high accuracy hybridization assays, a total homology is necessary, and therefore preferred.

The terms "homology" and "homologous" are, with respect to DNA fragments, intended to mean a homology between the nucleotides in question between which the homology is to be established, in the match with respect to identity and position of the nucleotides of the DNA fragments. With respect to polypeptides and fragments thereof described herein, the terms are intended to mean a homology between the amino acids in question between which the homology is to be established, in the match with respect to identity and position of the amino acids of the polypeptides.

Considerations similar to those given above for the immunological reactivity and cross-reactivity of antigens can be applied for the distinction between a nucleic acid fragment which "hybridizes readily" and a fragment which "exhibits substantially no hybridization" under high stringency conditions.

The term "highly stringent" when used in conjunction with hybridisation conditions is as defined in the art that is 5-10° C. under the melting point T_(m), cf. Sambrook et al, 1989, pages 11.45-11.49.

Interesting nucleic acid fragments of the invention encodes a polypeptide comprising an amino acid sequence comprised in a polypeptide present in whole cell preparations of Borrelia burgdorferi B31, Borrelia garinii IP90, and/or Borrelia afzelii ACAI but substantially absent from whole cell preparations of at least 95% of randomly selected Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, or Borrelia hispanica. This encoded polypeptide may according to the invention comprise at least a part of an amino acid sequence of a 66 kDa protein which is present in Bb, and it is preferred that the polypeptide encoded by the nucleic acid fragment of the invention is a 66 kDa protein present in whole cell preparations, and preferably this 66 kDa protein is also present in fraction B (as discussed in the examples). It is especially preferred that the encoded polypeptide further is a natively surface exposed protein of Borrelia burgdorferi B31, Borrelia garinii IP90, or Borrelia afzelii ACAI.

By the terms "present" and "substantially absent", when referring to amino acid sequences and polypeptides in bacteria, are meant that the concentration of the amino acid sequence/polypeptide in a bacterium where it is "present" is at least 100 times higher than in a bacterium where it is substantially absent. However, it is preferred that the ratio of the concentrations are at least 1000, and more preferred at least 10,000, 100,000 or even higher. It is especially preferred that there can be observed no concentration of the amino acid sequence/polypeptide in the bacterium from where it is substantially absent.

It will be understood from the above that various analogues and subsequences of the nucleic acids disclosed herein are interesting aspects of the invention, as are nucleic acid fragments encoding fused polypeptides including polypeptides encoded by nucleic acid fragments of the invention.

The term "analogue" with regard to the nucleic acid fragments of the invention is intended to indicate a nucleotide sequence which encodes a polypeptide identical or substantially identical to a polypeptide encoded by a nucleic acid fragment of the invention (SEQ ID NOs: 4, 6, 8 and 14).

It is well known that the same amino acid may be encoded by various codons, the codon usage being related, inter alia, to the preference of the organisms in question expressing the nucleotide sequence. Thus, one or more nucleotides or codons of a nucleic acid fragment of the invention may be exchanged by others which, when expressed, result in a polypeptide identical or substantially identical to the polypeptide encoded by the nucleic acid fragment in question.

Also, the term "analogue" is used in the present context to indicate a nucleic acid fragment or a nucleic acid sequence of a similar nucleotide composition or sequence as the nucleic acid sequence encoding the amino acid sequence having the immunological properties discussed above, allowing for minor variations which do not have an adverse effect on the biological function and/or immunogenicity as compared to the disclosed polypeptides, or which give interesting and useful novel binding properties or biological functions and immunogenicities etc. of the analogue. The analogous nucleic acid fragment or nucleic acid sequence may be derived from an animal or a human or may be partially or completely of synthetic origin as described herein. The analogue may also be derived through the use of recombinant nucleic acid techniques.

Furthermore, the terms "analogue" and "subsequence" are intended to allow for variations in the sequence such as substitution, insertion (including introns), addition, deletion and rearrangement of one or more nucleotides, which variations do not have any substantial effect on the polypeptide encoded by a nucleic acid fragment or a subsequence thereof. The term "substitution" is intended to mean the replacement of one or more nucleotides in the full nucleotide sequence with one or more different nucleotides, "addition" is understood to mean the addition of one or more nucleotides at either end of the full nucleotide sequence, "insertion" is intended to mean the introduction of one or more nucleotides within the full nucleotide sequence, "deletion" is intended to indicate that one or more nucleotides have been deleted from the full nucleotide sequence whether at either end of the sequence or at any suitable point within it, and "rearrangement" is intended to mean that two or more nucleotide residues have been exchanged with each other.

A preferred method of preparing variants of the 66 kDa antigens disclosed herein is site-directed mutagenesis. This technique is useful in the preparation of individual peptides, or biologically functional equivalent proteins or peptides, derived from the 66 kDa antigen sequences, through specific mutagenesis of the underlying DNA. The technique further provides a ready ability to prepare and test sequence variants, for example, incorporating one or more of the foregoing considerations, by introducing one or more nucleotide sequence changes into the DNA. Site-specific mutagenesis allows the production of mutants through the use of specific oligonucleotide sequences which encode the DNA sequence of the desired mutation, as well as a sufficient number of adjacent nucleotides, to provide a primer sequence of sufficient size and sequence complexity to form a stable duplex on both sides of the deletion junction being traversed. Typically, a primer of about 17 to 25 nucleotides in length is preferred, with about 5 to 10 residues on both sides of the junction of the sequence being altered.

In general, the technique of site-specific mutagenesis is well known in the art as exemplified by publications (Adelman et al., 1983). As will be appreciated, the technique typically employs a phage vector which exists in both a single stranded and double stranded form. Typical vectors useful in site-directed mutagenesis include vectors such as the M13 phage (Messing et al., 1981). These phage are readily commercially available and their use is generally well known to those skilled in the art.

In general, site-directed mutagenesis in accordance herewith is performed by first obtaining a single-stranded vector which includes within its sequence a DNA sequence which encodes the 66 kDa antigens. An oligonucleotide primer bearing the desired mutated sequence is prepared, generally synthetically, for example by the method of Crea et al. (1978). This primer is then annealed with the single-stranded vector, and subjected to DNA polymerizing enzymes such as E. coli polymerase I Klenow fragment, in order to complete the synthesis of the mutation-bearing strand. Thus, a heteroduplex is formed wherein one strand encodes the original non-mutated sequence and the second strand bears the desired mutation. This heteroduplex vector is then used to transform appropriate cells, such as E. coli cells, and clones are selected which include recombinant vectors bearing the mutated sequence arrangement.

The preparation of sequence variants of the selected 66 kDa genes using site-directed mutagenesis is provided as a means of producing potentially useful species of the 66 kDa genes and is not meant to be limiting as there are other ways in which sequence variants of the 66 kDa genes may be obtained. For example, recombinant vectors encoding the desired 66 kDa genes may be treated with mutagenic agents to obtain sequence variants (see, e.g., a method described by Eichenlaub, 1979) for the mutagenesis of plasmid DNA using hydroxylamine.

Analogues/subsequences of the disclosed nucleic acid fragments which also form part of the invention are nucleic acid fragments which are fused to at least one other nucleic acid fragment which encodes a protein enhancing the immunogenicity of the fused protein relative to a protein without the encoded fusion partner. Such encoded proteins may e.g. be lipoproteins, e.g. the outer membrane lipoprotein from E. coli and OspA from Borrelia burgdorferi sensu lato; viral proteins, e.g. from Hepatitis B surface antigen, Hepatitis B core antigen, and the influenza virus non-structural protein NS1; immunoglobulin binding proteins, e.g. protein A, protein G, and the synthetic ZZ-peptide; T-cell epitopes; or B-cell epitopes.

Other nucleic acid fragments to form part of a nucleic acid fragment of the invention encoding a fusion polypeptide are those encoding polypeptides which facilitates expression and/or purification of the fused peptide. Such encoded polypeptides could according to the invention be bacterial fimbrial proteins, e.g. the pilus components pilin and papA; protein A; the ZZ-peptide; the maltose binding protein; gluthatione S-transferase; β-galactosidase; or poly-histidine.

Other nucleic acid fragments of the invention of special interest are those encoding at least one epitope present in whole cell preparations of Borrelia burgdorferi B31, Borrelia garinii IP90, or Borrelia afzelii ACAI but substantially absent from whole cell preparations of at least 95% of randomly selected Borrelia hermsii, Borrelia crocidurae, Borrelia anserina, and Borrelia hispanica. Preferred are epitopes a of a 66 kDa protein present in whole cell preparations of Bb.

By the term "epitope" is meant the spatial part of an antigen responsible for the specific binding to the antigen-binding part of an antibody. It goes without saying that the identification of epitopes of the disclosed antigens will facilitate the production of polypeptides exhibiting marked antigenicity thus making them interesting with respect to diagnosis of Borreliosis and vaccination against infections with Bb.

The identification of epitopes can be performed in several ways. One possibility is to make a hydrophobicity plot as described herein, and thereafter selecting the special linear sequences of the polypeptide and investigate their immunogenicity. As mentioned herein, several regions of the disclosed polypeptides are regarded as interesting. Thus, nucleic acids encoding polypeptides substantially identical to the amino acid sequences 175-190, 285-305, 365-385, or 465-490 in SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, or SEQ ID NO: 13 also form part of the invention; such nucleic acid fragments may also be part of nucleic acid fragments encoding fusion polypeptides comprising multiple copies of at least one of epitope, as such fusion polypeptides should exhibit superior immunological utility in diagnostics as well as in vaccines.

Another way of simply identifying epitopes is to digest a polypeptide antigen with a known amino acid sequence with endo- and exopeptidases. The obtained fragments are tested against antibodies directed against the whole polypeptide, and by way of deduction, the precise location of the linear epitopes can be determined. A variation of this method involves the recombinant production of subfragments (cf. the above) of the full-length polypeptide followed by the same test procedure.

Another part of the invention relates to a substantially pure polypeptide exhibiting a substantial immunological reactivity with an antiserum from rabbits immunised with a 66 kDa polypeptide derived from Borrelia garinii IP90, said rabbit antiserum exhibiting substantially no immunological reactivity with whole cell preparations from at least 950 of randomly selected B. hermsii, B. crocidurae, B. anserina, or B. hispanica.

It will be understood that such a polypeptide may be encoded by a DNA fragment of the invention and that the polypeptides encoded by the DNA fragments of the invention also form part of the invention.

By the term "polypeptide" is herein understood a molecule comprising at least two amino acids joined by a peptide bond. The term polypeptide thus indicate small peptides (less than 10 amino acid residues), oligopeptides (between 10 and 100 amino acid residues), proteins (the functional entity including at least one peptide and/or prosthetic groups and/or glycosylation and/or lipidation etc.) as well as traditional polypeptides (more than 100 amino acid residues).

Interesting polypeptides according to the invention are those prepared by the well known methods of liquid or solid phase peptide synthesis utilizing the successive coupling of the individual amino acids of the polypeptide sequence. Alternatively, the polypeptide can be synthesized by the coupling of individual amino acids forming fragments of the polypeptide sequence which are later coupled so as to result in the desired polypeptide. These methods thus also constitute another interesting part of the invention.

Preferred polypeptides of the invention are recombinant polypeptides, normally prepared by a process comprising

inserting a nucleic acid fragment of the invention in an expression vector,

transforming a host organism or a host cell (normally a host organism or host cell which does not natively express the polypeptide of the invention) with the vector,

culturing the transformed host cell under conditions facilitating the expression of the polypeptide by the host organism or host cell,

harvesting the polypeptide, and optionally subjecting the polypeptide to post-translational modification(s), and

performing an at least partial purification of the polypeptide.

The need for post-translational modifications exists because certain polypeptides are prepared in the above-described manner lacking for instance a fatty-acylation of an amino acid residue, or the polypeptide have for some reason been prepared in an elongated version which should be cleaved before the polypeptide will prove functional. Thus, according to the invention the post-translational modifications involves lipidation, glycosylation, cleavage, or elongation of the polypeptide. In some instances, the host cell or cell line also processes the translation product so as to obtain a processed polypeptide.

The present invention thus also relates to the use of the nucleic acid fragments of the invention in the construction of vectors and in host cells. The following is a general discussion relating to such use and the particular considerations in practising this aspect of the invention.

In general, of course, prokaryotes are preferred for the initial cloning of nucleic sequences of the invention and constructing the vectors useful in the invention. For example, in addition to the particular strains mentioned in the more specific disclosure below, one may mention by way of example, strains such as E. coli K12 strain 294 (ATCC No. 31446), E. coli B, and E. coli X 1776 (ATCC No. 31537). These examples are, of course, intended to be illustrative rather than limiting.

Prokaryotes are also preferred for expression. The aforementioned strains, as well as E. coli W3110 (F-, lambda-, prototrophic, ATCC No. 273325), bacilli such as Bacillus subtilis, or other enterobacteriaceae such as Salmonella typhimurium or Serratia marcesans, and various Pseudomonas species may be used.

In general, plasmid vectors containing replicon and control sequences which are derived from species compatible with the host cell are used in connection with these hosts. The vector ordinarily carries a replication site, as well as marking sequences which are capable of providing phenotypic selection in transformed cells. For example, E. coli is typically transformed using pBR322, a plasmid derived from an E. coli species (see, e.g., Bolivar et al., 1977). The pBR322 plasmid contains genes for ampicillin and tetracycline resistance and thus provides easy means for identifying transformed cells. The pBR plasmid, or other microbial plasmid or phage must also contain, or be modified to contain, promoters which can be used by the microorganism for expression.

Those promoters most commonly used in recombinant DNA construction include the B-lactamase (penicillinase) and lactose promoter systems (Chang et al., 1978; Itakura et al., 1977; Goeddel et al., 1979) and a tryptophan (trp) promoter system (Goeddel et al., 1979; EPO Appl. Publ. No. 0036776). While these are the most commonly used, other microbial promoters have been discovered and utilized, and details concerning their nucleotide sequences have been published, enabling a skilled worker to ligate them functionally with plasmid vectors (Siebwenlist et al., 1980). Certain genes from prokaryotes may be expressed efficiently in E. coli from their own promoter sequences, precluding the need for addition of another promoter by artificial means.

In addition to prokaryotes, eukaryotic microbes, such as yeast cultures may also be used. Saccharomyces cerevisiase, or common baker's yeast is the most commonly used among eukaryotic microorganisms, although a number of other strains are commonly available. For expression in Saccharomyces, the plasmid YRp7, for example, is commonly used (Stinchcomb et al., 1979; Kingsman et al., 1979; Tschemper et al., 1980). This plasmid already contains the trpl gene which provides a selection marker for a mutant strain of yeast lacking the ability to grow in tryptophan for example ATCC No. 44076 or PEP4-1 (Jones, 1977). The presence of the trpl lesion as a characteristic of the yeast host cell genome then provides an effective environment for detecting transformation by growth in the absence of tryptophan.

Suitable promoting sequences in yeast vectors include the promoters for 3-phosphoglycerate kinase (Hitzman et al., 1980) or other glycolytic enzymes (Hess et al., 1968; Holland et al., 1978), such as enolase, glyceraldehyde-3-phosphate dehydrogenase, hexokinase, pyruvate decarboxylase, phosphofructokinase, glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruvate kinase, triosephosphate isomerase, phosphoglucose isomerase, and glucokinase. In constructing suitable expression plasmids, the termination sequences associated with these genes are also ligated into the expression vector 3' of the sequence desired to be expressed to provide polyadenylation of the mRNA and termination.

Other promoters, which have the additional advantage of transcription controlled by growth conditions are the promoter region for alcohol dehydrogenase 2, isocytochrome C, acid phosphatase, degradative enzymes associated with nitrogen metabolism, and the aforementioned glyceraldehyde-3-phosphate dehydrogenase, and enzymes responsible for maltose and galactose utilization. Any plasmid vector containing a yeast-compatible promoter, origin of replication and termination sequences is suitable.

In addition to microorganisms, cultures of cells derived from multicellular organisms may also be used as hosts. In principle, any such cell culture is workable, whether from vertebrate or invertebrate culture. However, interest has been greatest in vertebrate cells, and propagation of vertebrate in culture (tissue culture) has become a routine procedure in recent years (Tissue Culture, 1973). Examples of such useful host cell lines are VERO and HeLa cells, Chinese hamster ovary (CHO) cell lines, and W138, BHK, COS-7 293 and MDCK cell lines.

Expression vectors for such cells ordinarily include (if necessary) an origin of replication, a promoter located in front of the gene to be expressed, along with any necessary ribosome binding sites, RNA splice sites, polyadenylation site, and transcriptional terminator sequences.

For use in mammalian cells, the control functions on the expression vectors are often provided by viral material. For example, commonly used promoters are derived from polyoma, Adenovirus 2, and most frequently Simian Virus 40 (SV40). The early and late promoters of SV40 virus are particularly useful because both are obtained easily from the virus as a fragment which also contains the SV40 viral origin of replication (Fiers et al., 1978). Smaller or larger SV40 fragments may also be used, provided there is included the approximately 250 bp sequence extending from the HindIII site toward the BglI site located in the viral origin of replication. Further, it is also possible, and often desirable, to utilize promoter or control sequences normally associated with the desired gene sequence, provided such control sequences are compatible with the host cell systems.

An origin of replication may be provided either by construction of the vector to include an exogenous origin, such as may be derived from SV40 or other viral (e.g., Polyoma, Adeno, VSV, BPV) or may be provided by the host cell chromosomal replication mechanism. If the vector is integrated into the host cell chromosome, the latter is often sufficient.

In the light of the above discussion the methods for recombinantly producing the polypeptide of the invention are also a part of the invention, as are the vectors carrying and/or being capable of replicating the nucleic acids according to the invention in a host cell or a cell-line. According to the invention the expression vector can be e.g. a plasmid, a cosmid, a minichromosome, or a phage. Especially interesting are vectors which are integrated in the host cell/cell line genome after introduction in the host.

Another part of the invention are transformed cells (useful in the above-described methods) carrying and capable of replicating the nucleic acid fragments of the invention; the host cell can be a microorganism such as a bacterium, a yeast, or a protozoan, or a cell derived from a multicellular organism such as a fungus, an insect cell, a plant cell, or a mammalian cell. Especially interesting are cells from the bacterial species Escherichia, Bacillus and Salmonella, and a preferred bacterium is E. coli.

Yet another part of the invention relates to a stable cell line producing a polypeptide according to the invention, and preferably the cell line carries and expresses a nucleic acid of the invention.

Returning to the polypeptides of the invention: Also polypeptides which comprises an amino acid sequence exhibiting a sequence homology of at least 500 with SEQ ID NO: 4, SEQ ID NO: 6, SEQ ID NO: 8, SEQ NO: 10, or SEQ ID NO: 14 or subsequences thereof. However this homology should normally be higher, such as at least 60%, 70%, 80%, 85%, or even 90%. Preferred polypeptides have a homology of at least 92%, such as at least 95%, 97%, 98%, 99%, or even 100%.

A very important part of the invention is vaccines for conferring increased resistance to infection with Bb.

Thus, an important part of the invention relates to vaccines comprising an amount of the polypeptide according to the invention, the amount of the polypeptide being effective to confer substantially increased resistance to infections with Borrelia burgdorferi sensu lato in an animal, including a human being, optionally in combination with a pharmaceutically acceptable carrier or vehicle and the vaccine optionally further comprising an adjuvant. Of course, also vaccines comprising polypeptide fragments encoded by the nucleic acid fragments of the invention are a part of the invention, as such polypeptide fragments as mentioned above also form part of the invention.

By the term "conferring substantially increased resistance to infections" is meant that the administration of the vaccine to the animal has the effect that disease caused by infections with at least one strain of bacteria is avoided or at least that the risk of catching the disease is significantly reduced.

Part of the present invention contemplates vaccine preparation and use. General concepts related to methods of preparation and use are discussed in the following as applicable to preparations and formulations with the polypeptides of the invention.

Preparation of vaccines which contain peptide sequences as active ingredients is generally well understood in the art, as exemplified by U.S. Pat. Nos. 4,608,251; 4,601,903; 4,599,231; 4,599,230; 4,596,792; and 4,578,770, all incorporated herein by reference. Typically, such vaccines are prepared as injectables either as liquid solutions or suspensions; solid forms suitable for solution in, or suspension in, liquid prior to injection may also be prepared. The preparation may also be emulsified. The active immunogenic ingredient is often mixed with excipients which are pharmaceutically acceptable and compatible with the active ingredient. Suitable excipients are, for example, water, saline, dextrose, glycerol, ethanol, or the like, and combinations thereof. In addition, if desired, the vaccine may contain minor amounts of auxiliary substances such as wetting or emulsifying agents, pH buffering agents, or adjuvants which enhance the effectiveness of the vaccines.

The vaccines are conventionally administered parenterally, by injection, for example, either subcutaneously or intramuscularly. Additional formulations which are suitable for other modes of administration include suppositories and, in some cases, oral formulations. For suppositories, traditional binders and carriers may include, for example, polyalkalene glycols or triglycerides; such suppositories may be formed from mixtures containing the active ingredient in the range of 0.5% to 10%, preferably 1-2%. Oral formulations include such normally employed excipients as, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharine, cellulose, magnesium carbonate, and the like. These compositions take the form of solutions, suspensions, tablets, pills, capsules, sustained release formulations or powders and contain 10-95% of active ingredient, preferably 25-70%.

The proteins may be formulated into the vaccine as neutral or salt forms. Pharmaceutically acceptable salts include acid addition salts (formed with the free amino groups of the peptide) and which are formed with inorganic acids such as, for example, hydrochloric or phosphoric acids, or such organic acids as acetic oxalic, tartaric, mandelic, and the like. Salts formed with the free carboxyl groups may also be derived from inorganic bases such as, for example, sodium, potassium, ammonium, calcium, or ferric hydroxides, and such organic bases as isopropylamine, trimethylamine, 2-ethylamino ethanol, histidine, procaine, and the like.

The vaccines are administered in a manner compatible with the dosage formulation, and in such amount as will be therapeutically effective and immunogenic. The quantity to be administered depends on the subject to be treated, including, e.g., the capacity of the individual's immune system to synthesize antibodies, and the degree of protection desired. Precise amounts of active ingredient required to be administered depend on the judgement of the practitioner. However, suitable dosage ranges are of the order of several hundred micrograms active ingredient per vaccination with a preferred range from about 1 μg to 500 μg, especially in the range from about 10 μg to 50 μg. Suitable regimes for initial administration and booster shots are also variable but are typified by an initial administration followed by subsequent inoculations or other administrations.

The manner of application may be varied widely. Any of the conventional methods for administration of a vaccine are applicable. These are believed to include oral application on a solid physiologically acceptable base or in a physiologically acceptable dispersion, parenterally, by injection or the like. The dosage of the vaccine will depend on the route of administration and will vary according to the size of the host.

Various methods of achieving adjuvant effect for the vaccine include use of agents such as aluminum hydroxide or phosphate (alum), commonly used as 0.05 to 0.1 percent solution in phosphate buffered saline, admixture with synthetic polymers of sugars (Carbopol) used as 0.25 percent solution, aggregation of the protein in the vaccine by heat treatment with temperatures ranging between 70° to 101° C. for 30 second to 2 minute periods respectively. Aggregation by reactivating with pepsin treated (Fab) antibodies to albumin, mixture with bacterial cells such as C. parvum or endotoxins or lipopolysaccharide components of gramnegative bacteria, emulsion in physiologically acceptable oil vehicles such as mannide mono-oleate (Aracel A) or emulsion with 20 percent solution of a perfluorocarbon (Fluosol-DA) used as a block substitute may also be employed.

In many instances, it will be desirable to have multiple administrations of the vaccine, usually not exceeding six vaccinations, more usually not exceeding four vaccinations and preferably one or more, usually at least about three vaccinations. The vaccinations will normally be at from two to twelve week intervals, more usually from three to five week intervals. Periodic boosters at intervals of 1-5 years, usually three years, will be desirable to maintain levels of the antibodies. The course of the immunization may be followed by assays for antibodies for the supernatant antigens. The assays may be performed by labelling with conventional labels, such as radionuclides, enzymes, fluorescers, and the like. These techniques are well known and may be found in a wide variety of patents, such as U.S. Pat. Nos. 3,791,932; 4,174,384 and 3,949,064, as illustrative of these types of assays.

It is contemplated that the vaccines of the invention should be effective in activating both arms of the immune system. Thus, vaccines capable of eliciting a cell-mediated immune reaction are also a part of the invention.

One such vaccine of the invention is a live vaccine comprising a non-pathogenic microorganism carrying and being capable of expressing a nucleic acid fragment of the invention, the live vaccine being effective in conferring increased resistance to infection with Borrelia burgdorferi sensu lato in an animal, including a human being. The non-pathogenic microorganism could for instance be a bacterium such as a strain of Mycobacterium bovis BCG. The live vaccine could for instance express a multitude of the polypeptides of the invention, thereby making it more immunogenic.

Another way of eliciting a cell-mediated response is to employ an adjuvant as described above. However, recent research have revealed a new an exciting possibility, wherein a DNA fragment is introduced into non-replicating cells of the vaccinated animal, whereafter the translational product is exposed on the cell-surface thereby eliciting a cell-mediated response. These methods are reviewed in Ulmer et al., 1993, which hereby is included by reference.

Therefore, also a part of the invention is a vaccine comprising a nucleic acid fragment according to the invention, the vaccine effecting in vivo expression of antigens by an animal, including a human being, to whom the vaccine has been administered, the amount of expressed antigens being effective to confer substantially increased resistance to infections with Borrelia burgdorferi sensu lato in an animal, including a human being.

It is also possible that a vaccine according to the invention comprising other Borrelia antigens may prove useful, as a more efficient immunological response could be elicited. Such a combination vaccine could for instance contain OspA, OspB, OspC, OspD, and/or PC. In this regard, also combination vaccines comprising at least two different polypeptides according to the invention are interesting.

Methods of actively immunizing animals, including mammals such as human beings against infections with Bb are also parts of the invention. The methods generally consists the administration to the animal of an immunogenically effective amount of the vaccines of the invention. Methods for passive immunisation comprising administering to the animal an immunogenically effective amount of an antibody of the invention (as described below) is also included in the invention.

An important part of the invention relates to at least partially purified antibodies, polyclonal or monoclonal, reacting substantially specifically with a protein according to the invention, or proteins encoded by the nucleic acid fragments of the invention. According to the invention, monoclonal antibodies are preferred.

The phrase "reacting substantially specifically" is intended to indicate that the antibody will show no substantial immunological reactivity (as defined above) with other antigens which might possibly be present in an embodiment of the present invention where the antibody is used.

The antibodies of the invention are prepared by methods well-known to the skilled person.

Other important parts of the present invention are compositions adapted for the determination of Bb in animals (including mammals, e.g. humans). Accordingly, methods of determining the presence of Bb are also a part of the invention.

A diagnostic composition adapted for the determination of Borrelia burgdorferi sensu lato in an animal, including a human being, or in a sample, the composition comprising an amount of the polypeptide of the invention effective to detectably react with antibodies present in the animal or in the sample, the antibodies being directed against Borrelia burgdorferi sensu lato, the composition optionally comprising a detectable label, is also a part of the invention. Similar compositions including the nucleic acid fragments of the invention or the antibodies of the invention are also a part of the invention, as will be apparent from the claims.

The phrase "to detactably react with" is intended to mean a reaction between to substances in an assay, the reaction being significant enough so as to give a signal in the assay which is clearly different from a negative signal. Thus, the detectable reaction is highly dependent on the type of detection means used. Very sensitive methods like ELISAs and RIAs will detect reactions involving few molecules, whereas more insensitive reactions will demand that the reaction involves many molecules.

Methods of determining the presence of Bb antibodies or components of Bb in samples or in animals are also parts of the invention, as a method of determining the presence of antibodies directed against Borrelia burgdorferi sensu lato in an animal, including a human being, or in a sample, comprising administering the polypeptide of the invention to the animal or incubating the sample with the polypeptide of the invention, and detecting the presence of bound antibody resulting from the administration or incubation. Likewise, a method of determining the presence of a Borrelia burgdorferi sensu lato antigen in an animal, including a human being, or in a sample, comprising administering an antibody of the invention to the animal or incubating the sample with the antibody, and detecting the presence of bound antigen resulting from the administration or incubation, forms part of the invention. Finally a method of determining the presence of Borrelia burgdorferi sensu lato nucleic acids in an animal, including a human being, or in a sample, comprising administering a nucleic acid fragment of the invention to the animal or incubating the sample with the nucleic acid fragment of the invention or a nucleic acid fragment complementary thereto, and detecting the presence of hybridized nucleic acids resulting from the incubation, is also included in the invention.

Finally, diagnostic kits for the diagnosis of on-going or previous Bb infection forms part of the invention. The diagnostic kits of the invention comprises an antibody, a nucleic acid, or a polypeptide according to the invention in combination with a means for detecting the interaction with the relevant substance reacting with these substances of the invention; the choice of these detection means is discussed elsewhere herein.

In both the diagnostic methods, compositions, and kits the antibodies, nucleic acids or polypeptides according to the invention may optionally be coupled to solid or semi-solid carriers, as is well-known in the art.

As will appear from the examples, the present invention relates to the utility of Bb associated antigenic proteins as diagnostic or preventive tools in Lyme disease. Proteins have been identified as associated only with virulent isolates of Bb, providing a basis for several types of diagnostic tests for infections with Bb and for Lyme disease, including immunodiagnostic and nucleic acid identification, such as those based on amplification procedures (PCR etc.).

It is contemplated that several assays for the presence of Bb or for Lyme disease may be developed using any of the polypeptides of the invention, the corresponding nucleic acid fragments encoding the protein, functionally similar proteins and their epitopes, or by detection of other appropriate nucleic acids. These methods are similar in principle to those previously described (Magnarelli et al., 1989; Magnarelli et al., 1984; and Craft et al., 1984). Reactive epitopes representing portions of the 66 kDa protein sequences could be utilized in an analogous manner.

Another promising assay is the microcapsule agglutination technique (MCAT) (Arimitsu et al., 1991). In this procedure, microscopic polystyrene beads are coated with Bb antigen and incubated with dilutions of patient serum. After overnight incubation at 4° C., the agglutination patterns are determined. Using whole Bb as antigen, the MCAT has been shown to be highly discriminatory between Lyme disease patients and healthy individuals, with little overlap in agglutination titer, although false positive reactions have been obtained with rheumatoid arthritis patients (Anderson et al., 1988) and leptospirosis samples (Barbour, 1988). An assay using 66 kDa protein alone or in combination with other antigens such as the 94 kDa, 30 kDa and 21 kDa antigens should be feasible. Such combination may increase sensitivity of the assay.

Also contemplated within the scope of the present invention is the use of the disclosed nucleic acid fragments as hybridization probes. While particular examples are provided to illustrate such use, the following provides general background for hybridization applications taking advantage of the disclosed nucleic acid sequences of the invention.

The invention has disclosed a DNA segment encoding an antigenic Bb protein. Detection of that DNA or various parts thereof is expected to provide the basis for a useful assay. One method of detecting the 66 kDa antigen genes is based on selective amplification of known portions of the gene. A particular method utilizes PCR amplification, using any of a number of primers that could be prepared from knowledge of the nucleic acid sequence of SEQ ID NO: 3, SEQ ID NO: 5 and SEQ ID NO: 7, and SEQ ID NO: 13. Generally, such primers are relatively short, e.g., 7-28 base pairs in length, and may be derived from the respective sense or anti-sense strands of the disclosed DNA segment. Synthesis of these primers may utilize standard phosphoramidite chemistry (Beaucage et al., 1981).

As mentioned, in certain aspects, the DNA sequence information provided by the invention allows for the preparation of relatively short DNA (or RNA or PNA) sequences having the ability to specifically hybridize to Bb gene sequences. In these aspects, nucleic acid probes of an appropriate length are prepared based on a consideration of the sequence, e.g., SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, and SEQ ID NO: 13 or derived from flanking regions of these genes. The ability of such nucleic acid probes to specifically hybridize to the Bb gene sequences lend them particular utility in a variety of embodiments. Most importantly, the probes can be used in a variety of diagnostic assays for detecting the presence of pathogenic organisms in a given sample. However, either uses are envisioned, including the use of the sequence information for the preparation of mutant species primers, or primers for use in preparing other genetic constructs.

To provide certain of the advantages in accordance with the invention, the preferred nucleic acid sequence employed for hybridization studies or assays includes sequences that are complementary to at least a 10 to 40, or so, nucleotide stretch of the selected sequence, such as that shown in SEQ ID NO: 3, SEQ ID NO: 5, SEQ ID NO: 7, and SEQ ID NO: 13. A size of at least 10 nucleotides in length helps to ensure that the fragment will be of sufficient length to form a duplex molecule that is both stable and selective. Molecules having complementary sequences over stretches greater than 10 bases in length are generally preferred, though, in order to increase stability and selectivity of the hybrid, and thereby improve the quality and degree of specific hybrid molecules obtained. Thus, one will generally prefer to design nucleic acid molecules having gene-complementary stretches of 15 to 20 nucleotides, or even longer where desired. Such fragments may be readily prepared by, for example, directly synthesizing the fragment by chemical means, by application of nucleic acid reproduction technology, such as the PCR technology of U.S. Pat. No. 4,603,102, or by introducing selected sequences into recombinant vectors for recombinant production.

The present invention will find particular utility as the basis for diagnostic hybridization assays for detecting Bb-specific RNA or DNA in clinical samples. Exemplary clinical samples that can be used in the diagnosis of infections are thus any samples which could possibly include nucleic acid, including samples from tissue, blood serum, urine or the like. A variety of tissue hybridization techniques and systems are known which can be used in connection with the hybridization aspects of the invention, including diagnostic assays such as those described in Falkow et al., U.S. Pat. No. 4,358,535.

Accordingly, the nucleotide sequences of the invention are important for their ability to selectively form duplex molecules with complementary stretches of Bb gene segments. Depending on the application envisioned, one will desire to employ varying conditions of hybridization to achieve varying degree of selectivity of the probe toward the target sequence. For applications requiring a high degree of selectivity, one will typically desire to employ relatively stringent conditions to form the hybrids, for example, one will select relatively low salt and/or high temperature conditions, such as provided by 0.02M-0.15M NaCl at temperatures of 50° C. to 70° C. These conditions are particularly selective, and tolerate little, if any, mismatch between the probe and the template or target strand.

Of course, for some applications, for example, where one desires to prepare mutants employing a mutant primer strand hybridized to an underlying template, less stringent hybridization conditions are called for in order to allow formation of the heteroduplex. In these circumstances, one would desire to employ conditions such as 0.15 M-0.9 M salt, at temperatures ranging from 20° C. to 55° C. In any case, it is generally appreciated that conditions can be rendered more stringent by the addition of increasing amounts of formamide, which serves to destabilize the hybrid duplex in the same manner as increased temperature. Thus, hybridization conditions can be readily manipulated, and thus will generally be a method of choice depending on the desired results.

In clinical diagnostic embodiments, nucleic acid sequences of the present invention are used in combination with an appropriate means, such as a label, for determining hybridization. A wide variety of appropriate indicator means are known in the art, including radioactive, enzymatic or other ligands, such as avidin/biotin, which are capable of giving a detectable signal. In preferred diagnostic embodiments, one will likely desire to employ an enzyme tag such as alkaline phosphatase or peroxidase, instead of radioactive or other environmentally undesirable reagents. In the case of enzyme tags, colorimetric indicator substrates are known which employed to provide a means visible to the human eye or spectrophotometrically, to identify specific hybridization with pathogen nucleic acid-containing samples. Luminescent substrates, which give off light upon enzymatic degradation, could also be employed and may provide increased sensitivity.

In general, it is envisioned that the hybridization probes described herein will be useful both as reagents in solution hybridization as well as in embodiments employing a solid phase. In embodiments involving a solid phase, the test DNA (or RNA) from suspected clinical samples, such as exudates, body fluids (e.g., amniotic fluid cerebrospinal fluid) or even tissues, is adsorbed or otherwise affixed to a selected matrix or surface. This fixed, single-stranded nucleic acid is then subjected to specific hybridization with selected probes under desired conditions. The selected conditions will depend on the particular circumstances based on the particular criteria required (depending, for example, on the G+C contents, type of target nucleic acid, source of nucleic acid, size of hybridization probe, etc.). Following washing of the hybridized surface so as to remove non-specifically bound probe molecules, specific hybridization is detected, or even quantified, by means of the label.

Plasmids pJB-101, pJB-102, and pJB-104 have been deposited at Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH under the terms and conditions of the Budapest Treaty on the Jun. 17, 1994.

LEGENDS TO THE FIGURES

FIGS. 1A and 1B. Effect of proteases on B. afzelii ACAI cells.

A: Coomassie blue-stained PAGE of the bacterial lysates after the cells were incubated with buffer alone, lane 1; trypsin, lane 2; or proteinase K, lane 3.

B: PAGE of the subcellular fraction of membrane components (Fraction B) recovered from the cells treated in three different ways described in section A. Arrows indicate the position of 66 kDa protein. Mw: molecular weight, kD: kilodalton.

FIGS. 2A and 2B. Comparison of phenotypic expression of the 66 kDa protein in Borrelia species.

A: Coomassie blue-stained PAGE of the whole cell proteins of B. burgdorferi B31, lane 1; B. afzelii ACAI, lane 2; B garinii Ip90, lane 3; B. hermsii, lane 4; B. crocidurae, lane 5; and B. anserina, lane 6.

B: Reactivity of Borrelia proteins against rabbit anti-66 kDa protein antibody in Western blot. Borrelia species are numbered as in section A. Arrow indicates the position of the 66 kDa protein. Mw: molecular weight, kD: kilodalton.

FIGS. 3A and 3B. Southern blot analysis of DNA.

A: DNA separated by pulse-field agarose gel electrophoresis. Lane 1, DNA prepared from B. burgdorferi B31. Lane 2, DNA prepared from Borrelia afzelii ACAI. Lane 3, DNA prepared from Borrelia garinii Ip90.

B: DNA subsequently transferred to a Hybond-N membrane and cross-linked with UV-light and probed at 55° C. with a radiolabelled DNA probe derived by PCR amplification of the 66 kDa gene from Borrelia garinii Ip90. Lane 1, Lane 2 and Lane 3 same as above.

FIGS. 4A and 4B. Western blot analysis of recombinant 66 kDa protein expressed in E. coli.

A: Proteins prepared from uninduced E. coli.

B: Proteins prepared from induced E. coli.

Proteins were separated by 12.50 SDS-PAGE and subsequently transferred to an Immobilon-P membrane by electroblotting. Non-specific binding was blocked by immersing the filter in 5% BSA. The proteins were visualised by using the rabbit anti-66 kDa serum as primary antibody and an alkaline phosphatase conjugated anti-rabbit IgG secondary antibody with a subsequent developing reaction using the substrate BCIP. Lane 1, proteins prepared from whole cells. Lane 2, proteins from the supernatant obtained after sonication. Lane 3, proteins obtained by extraction of the pellet after sonication with 2M urea. Lane 4, proteins obtained by further extraction of the pellet after sonication with 8M urea. Lane 5, fraction B prepared from B. garinii Ip90.

FIGS. 5A, 5B, and 5C. Plot of antigenicity index of the 66 kDa protein.

The plots were made using the Jameson-Wolf algorithm provided in the MacVector software package.

A: 66 kDa protein from B. burgdorferi B31.

B: 66 kDa protein from B. afzelii ACAI.

C: 66 kDa protein from B. garinii Ip90.

EXAMPLES

Bacterial strains and culture conditions. Borrelia strains used in this study were the following: strain B31 of B. burgdorferi, a tick isolate from North America (ATCC 35210); strain ACAI of B. afzelii, a human skin isolate from Sweden (Åsbrink et al. 1984); strain Ip90 of B. garinii, a tick isolate from the Asian Russia (Kryuchechnikov et al. 1988); strain B. burgdorferi B313, a mutant of B. burgdorferi B31 lacking OspA and OspB (Sadziene et al. 1993).

Also used were three relapsing fever borreliae species, B. hermsii, B. crocidurae, and B. hispanica, and B. anserina, the causative agent of avian borreliosis.

Borreliae were grown in BSK II medium (Barbour 1984) and the cells were harvested in late-log phase by centrifugation at 5,000 rpm for 20 min.

The Escherichia coli strains Dh5α and BL21 were used for transformation with the recombinant plasmids in, respectively, DNA cloning and gene expression experiments. E. coli strains were grown in Luria broth medium (Gibco BRL, Gaithersburg, Md.) supplemented, when required, with carbenicillin (Sigma, St. Louis, Mo.) at 50 μg/ml.

Example 1

Preparation of Borrelia proteins, sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE), and Western blot.

1.1 Preparation of Borrelia proteins.

For the whole-cell protein preparations, bacteria harvested from 200 ml of BSK II medium were washed twice with phosphate-buffered saline-5 mM MgCl₂, (PBS-Mg). The pellet was suspended in 2 ml of PBS, sonicated and the supernatant was collected after centrifugation at 10,000 rpm for 30 min. In some experiments whole-cell lysate was obtained by boiling washed bacteria for 3 min in SDS-PAGE sample buffer.

The subcellular fraction of borreliae outer membrane components (designated Fraction B) was prepared as described elsewhere (WO 90/04411). Briefly, cells harvested from 1.5 1 of the culture were washed three times with 10 mM Tris-HCl (pH 7.4), 150 mM NaCl and 5 mM MgCl₂. (TSM buffer). Octyl-β-D-glucopyranoside (OGP) (Sigma St. Louis, Mo.) was added to a final concentration of 20 in 10 ml TSM buffer and the suspension was incubated at 37° C. for 60 min. The cell lysate was centrifuged and the supernatant was incubated at 56° C. for 30 min. The precipitate was removed by centrifugation at 20,000 rpm for 30 min at 37° C., and the supernatant was dialysed against water at 4° C. for 2 days. The precipitate (Fraction B) formed in the dialysis bag was recovered by centrifugation at 20,000 rpm for 30 min at 25° C.

1.2 Separation of proteins by SDS-PAGE.

Bacterial proteins were separated by 12.5% SDS-PAGE essentially according to Laemmli (1970). Subsequently, gels were either stained with Coomassie Blue R-250 (CB) (Sigma, St Louis, Mo.) or were subjected to Western blotting.

1.3 Western blotting.

The proteins were transferred to Immobilon-P membrane (Millipore, Bedford, Mass.) by electroblotting at 0.8 mA/cm² for 1 h. The nonspecific binding was blocked by immersing the filter for 2 h into 5% bovine serum albumin (BSA) (Sigma, St. Louis, Mo.) in PBS, containing 0.05% Tween-20 (PBS-T). Primary or secondary antibodies were diluted with 2.5% BSA in PBS-T, and both incubations of the filter for 1 h was followed by washing in PBS-T. In a developing reaction the substrate for the alkaline phosphatase conjugate was 5-bromo-4-chloro-3-indolyl phosphate (BCIP) (Sigma, St. Louis, Mo.).

Example 2

Preparation of antiserum against 66 kDa.

2.1 Purification of 66 kDa

The 66 kDa protein was purified by 12.50 SDS-PAGE of Fraction B obtained from the B. garinii IP90 spirochaetes. The appropriate band was visualized by staining the gel with 0.05% CB in water without fixation in MeOH and Acetic acid. The protein band contained approximately 100 μg of 66 kDa.

2.2 Immunization of rabbits.

Approximately 100 μg of the 66 kDa protein prepared as described above was homogenised and used in each of four immunizations of one rabbit performed in one and two (for the last immunization) months intervals. Seven serum samples were obtained during a 5 months period, and serum was diluted 1:1,000 when used for Western blot analysis.

Example 3

Cell surface proteolysis of Borrelia cells.

3.1 Protease treatment of borreliae cells.

Cell surface proteolysis of B. afzelii ACAI cells was conducted as previously described (Barbour et al. 1984). Briefly, washed spirochaetes were resuspended in PBS-Mg at a concentration of 2×10⁹ cells/ml. To 950 μl of the cell suspension was added 50 μl of one of the following: distilled water, proteinase K (Sigma, St Louis, Mo.) (4 mg/ml in water) or trypsin (Gibco BRL, Gaithesburg, Md.) (1 mg/ml in 10⁻³ M HCl). After incubation for 40 min at 20° C. the proteolytic treatment was stopped by the addition of 10 μl from a solution of the peptidase inhibitor phenylmethylsulfonyl fluoride (PMSF) (Sigma, St. Louis, Mo.) (50 mg of PMSF per 1 ml of isopropanol), and the cells were centrifuged and washed twice with PBS-Mg. The pellets were resuspended in TSM buffer. One-third of the cell suspension of each preparation was subjected to the whole cell protein extraction by boiling in SDS-PAGE sample buffer. The remaining part of the suspensions were used to prepare the subcellular fraction of the borrelial outer membrane components, Fraction B, as described above.

3.2 Analysis of the protease treated Borrelia cells.

The SDS-PAGE result of the protease treated B. afzelii ACAI cells is presented in FIG. 1. As seen in the CB stained protein profiles of the whole-cell lysates (FIG. 1A), proteinase K affected considerably the minor protein with an apparent molecular weight of 66 kDa. The protein composition of the subcellular fractions of outer membrane components (Fraction B) recovered from protease treated and untreated spirochaetes, was also investigated (FIG. 1B). The 66 kDa protein was shown to constitute a substantial part of the Fraction B, obtained from the protease untreated cells. In the Fraction B derived from the spirochaetes proteolysed with trypsin or proteinase K, the 66 kDa protein was, respectively, reduced in amount or entirely absent. The finding that protease treatment reduces the amount of the 66 kDa protein clearly shows that the 66 kDa protein is surface exposed, and most probably associated with the outer membrane of the borrelia.

Example 4

Expression of the 66 kDa protein in different Borrelia species

4.1 SDS-PAGE analysis.

The CB stained SDS-PAGE of the whole-cell protein preparations of Lyme disease borreliae and other Borrelia species is shown in FIG. 2A. The 66 kDa protein was present in the whole-cell preparation of B. burgdorferi B31, B. afzelii ACAI, and B. garinii Ip90. The PAGE revealed no major differences among the borrelial strains in respect of either apparent molecular weight or expression level of the 66 kDa protein. In the analogous preparations of B. hermsii, B. crocidurae, and B. anserina no visible band corresponding to the 66 kDa protein was detectable. In addition to being present in fraction B from B. afzelii ACAI (cf. example 6), the 66 kDa protein was recovered also in the Fraction B of B. burgdorferi B31 and B. garinii Ip90, however, it was absent in the Fraction B obtained from B. crocidurae and B. hispanica (data not shown).

4.2 Western blotting.

In Western blot analysis (FIG. 2B), the 66 kDa protein of B. burgdorferi B31, B. afzelii ACAI, and B. garinii Ip90 reacted similarly with the rabbit antiserum, raised against the 66 kDa protein of the latter strain. There was no apparent reactivity of the antiserum with B. hermsii, B. crocidurae, B. anserina (FIG. 2B), and B. hispanica (data not shown) proteins.

The rabbit antiserum raised against the 66 kDa protein of B. garinii Ip90, in Western blots reacted equally against 66 kDa protein of B. burgdorferi B31 and B. Afzelii ACAI indicating that 66 kDa protein is highly conserved among Lyme disease associated borreliae.

These data indicate that 66 kDa protein is unique among Lyme disease borreliae. Conversely, it was shown recently that the ospC gene homologues and OspC-related proteins are present in Borrelia species not associated with Lyme borreliosis (Marconi et al. 1993).

Example 5

In vitro growth inhibition of borreliae by antibodies against the 66 kDa protein

The in vitro growth inhibition of borreliae by antibodies against the 66 kDa protein was performed as described elsewhere (Sadziene et al. 1993). Briefly, borreliae were grown to the concentration of approximately 108 cells/ml, as counted in a Petroff-Hauser chamber by phase-contrast microscopy. The concentration of the cells was adjusted to 2×10⁷ cells/ml by adding fresh medium. 100 μl of the diluted culture was placed in flat-bottomed wells of 96-well microtiter plates, and the rabbit antiserum against the 66 kDa protein prepared as described above diluted twofold in BSK II medium was added. The serum obtained from the same rabbit before the immunization was used for negative control. The plates were then incubated for 72 h at 34° C., and the inhibitory titer of the antiserum was evaluated by comparing the cell counts with the negative control. Complement was inactivated in all sera by heat-treatment at 56° C. for 30 min.

The effect of the rabbit monospecific polyclonal anti-66 kDa protein antibodies on in vitro growth of borreliae was examined. The growth inhibition, occurring after adding the antibodies into the culture, resulted in reduced cell counts and appearing of mainly not motile spirochaetes, carrying large surface blebs. For all Lyme disease associated Borrelia strains included in the assay, in vitro growth was inhibited by the antibodies against the 66 kDa protein. The inhibitory titer of the antiserum was 1:8, 1:4,and 1:4 for, respectively, B. burgdorferi B31, B. afzelii ACAI, and B. garinii Ip90.

The inhibitory titer of the antiserum was 1:16 when the growth inhibition test was performed on the B. burgdorferi B31 mutant B313 lacking OspA and OspB.

The antiserum raised against the 66 kDa protein of B. garinii Ip90 was able to inhibit the in vitro growth of all three Lyme disease associated Borrelia strains used in the assay. This further indicates that the 66 kDa protein is highly conserved among Lyme disease associated borreliae and hence is an antigen being a potential vaccine candidate and a diagnostic tool.

Example 6

Isolation and N-terminal amino acid sequencing of the 66 kDa protein.

6.1 Amino acid sequencing.

The Fraction B of strain ACAI of B. afzelii was electrophoresed and transferred to Fluorotrans transfer membrane (Pall, East Hills, N.Y.). The protein bands were visualized by staining the membrane with 0.1% CB in 50% methanol. After destaining with 50% methanol, the 66 kDa protein band was cut from the membrane and N-terminal amino acid sequence analysis was performed on a 477A sequenator (Applied Biosystems, Foster City, Calif.) at Umea University.

N-terminal amino acid sequence of the 66 kDa protein, recovered from the Fraction B of B. afzelii ACAI, is presented, SEQ ID NO: 1.

6.2 Design of oligonucleotide probe.

The sequence of the 8 amino acid fragment was used to design the oligonucleotide sequence, SEQ ID NO: 2. The choice of A and T nucleotides in the wobble positions was reasoned by the preferential utilisation of codons with A and T nucleotides in Borrelia genome (Burman et al. 1990).

Example 7

Preparation of Bb DNA libraries.

7.1 Extraction of DNA.

The spirochaetes harvested from 400 ml of culture, were washed twice with 50 mM Tris-HCl (pH=7.4) and resuspended in 10 ml of buffer containing 50 mM Tris-HCl (pH=7.4), 25% sucrose, and 50 mM EDTA. The cells were lysed by adding SDS to a final concentration of 2%, lysozyme (Sigma, St. Louis, Mo.) (1.5 mg/ml), proteinase K (Sigma, St. Louis, Mo.) (0.1 mg/ml), and RNAase A (Sigma, St Louis, Mo.) (10 μg/ml). The DNA was extracted with buffered phenol and ethanol precipitated.

7.2 Construction of a genomic DNA library.

Restriction enzymes were obtained from Boehringer, Mannheim, Germany. 100 ng of borrelial genomic DNA prepared as described above was completely digested using EcoRI, XbaI, and PstI restriction endonucleases separately or in combination. For the partial digestions, 1 U of HindIII restriction endonuclease was incubated with 100 ng of genomic DNA for 10 min. at 37° C. Twenty nanograms of appropriately digested pUC18 (Pharmacia, Uppsala, Sweden) vector was used for ligations.

Example 8

Cloning and sequencing of the gene encoding the 66 kDa protein.

8.1 Screening of genomic library prepared from B. garinii Ip90.

The recombinant plasmids were transformed into competent E. coli Dh5α cells. Initially, B. garinii Ip90 HindIII digested genomic DNA library was screened with the designed degenerated oligonucleotide probe:

5'-GAA AAA GAT ATW TTT AAA ATW AAT-3' (SEQ ID NO: 2)

synthesized on the basis of the N-terminal amino acid sequence of the 66 kDa protein obtained in Example 5 (corresponding to amino acids 6-13). A recombinant plasmid designated (pJB-100) recovered from one positive E. coli Dh5α clone was sequenced. A gene fragment containing 592 bp including the ATG start codon followed by a discontinued open reading frame (ORF) was identified. The full-length 66 kDa protein gene was retrieved from B. garinii Ip90 EcoRI/XbaI genomic DNA library in the same vector by probing with the radiolabelled 66 kDa protein gene fragment within BamHI and HindIII restriction sites on pJB-100. A recombinant plasmid designated pJB-101 derived from another positive E. coli Dh5α clone, harboured a 4.1 kb DNA insert. The sequencing of the 66 kDa protein gene proceeded until the TAA stop codon was detected. The clones were sequenced by the dideoxy chain termination method, using /γ-³⁵ S/dATP (Amersham, Buckinghamshire, UK) and the Pharmacia T7 sequencing kit according to the procedure described by the manufacturer (Pharmacia, Uppsala, Sweden). The sequence fragments were assembled using the GENEUS software for VAX computer.

8.2 Screening of genomic library prepared from B. burgdorferi B31 and B. afzelii ACAI.

The 592 bp 66 kDa protein gene fragment within BamHI and HindIII restriction sites was recovered from plasmid preparation and radiolabelled by random primer technique. It was then used to screen B. burgdorferi B31 and B. afzelii ACAI genomic DNA libraries. A recombinant plasmid designated pJB-102 was found to harbour a 2.4 kb insert comprising a segment of the 66 kDa protein gene from B. burgdorferi B31 lacking the coding sequence for the signal peptide and a recombinant plasmid designated pJB-105 was found to harbour a 1.5 kb insert comprising the DNA encoding the initial Met and the following 17 amino acids. Together with the DNA sequence found in pJB-102, the full sequence encoding the 66 kDa protein from B31 was then established. A recombinant plasmid designated pJB-104 was found to harbour a 10 kb insert comprising the complete 66 kDa protein gene from B. afzelii ACAI. Both strands of the full-length genes coding for the 66 kDa protein in different Lyme disease Borrelia species were sequenced as described above.

8.3 Sequence analysis.

Sequence analyses were performed using the University of Wisconsin GCG Sequence Analysis Software Version 7.2 for VAX computer, MacVector (IBI, Newhaven Conn.) for Macintosh computers, and PC-Gene (Genofit) for XT/AT personal computers. Search in protein sequence databases was performed at the NCBI using the BLAST network service. The nucleotide sequence of the 66 kDa protein gene of B. burgdorferi B31, B. afzelii ACAI, B. garinii Ip90, as well as neighbouring regions are shown in SEQ ID NO: 3, SEQ ID NO: 5 SEQ ID NO: 7, and SEQ ID NO: 13. The ATG start codon was followed by ORF of 1857, 1860 and 1866 nucleotides for strains B31, ACAI, and Ip90, respectively. A consensus ribosomal binding site (RBS), GGAAGG, could be detected upstream of the start codon. Further upstream, sequences closely resembling the "-10"-region (-TATTAT-) and the "-35"-region (-TTGAAT-) were located at positions -185 and -209, respectively. The B31 clone did not contain the ATG start codon and the sequence coding for the signal sequence, but contained the sequence coding for the complete processed protein. The 66 kDa protein gene terminated at a TAA triplet, which was followed by AT rich region containing putative stem and loop structures.

The deduced amino acid sequence of the 66 kDa protein of B. burgdorferi B31, B. afzelii ACAI and B. garinii Ip90 is presented in SEQ ID NO: 4 and SEQ ID NO: 14, SEQ ID NO: 6 and SEQ ID NO: 8, respectively. The computer analysis predicted the potential leader peptidase I cleavage site between amino acid residues at position 21, and the N-terminal peak was found on the hydrophobicity plot (data not shown) in all three cases. The processed 66 kDa protein from the strains B31, ACAI and Ip90 consisted of, respectively, 597, 598 and 600 amino acids with a calculated molecular weight of 65,802 kDa, 65,796 kDa and 65.944 kDa. The amino acid sequence of the 66 kDa protein from B. burgdorferi B31 was 92.7% and 91.5% identical to the sequences from, respectively, B. afzelii ACAI and B. garinii Ip90. When compared with each other, the two latter strains showed 93.9% identity.

The level of similarity and identity between the deduced amino acid sequence of the 66 kDa protein from different borrelia strains further shows that this protein can be useful as a vaccine against Lyme disease as well as a target for diagnostic use.

Antigenicity plot

Potential antigenic regions of the deduced amino acid sequences of the 66 kDa proteins from Borrelia burgdorferi sensu stricto B31, Borrelia afzelii ACAI, and Borrelia garinii IP90 were identified by calculation of the antigenic index using the algorithm of Jameson and Wolf (1988). The results are shown in FIG. 5. Proposed epitopic regions having a high antigenic index are e.g. the amino acid sequences corresponding to positions 175-190, 285-305, 365-385, and 465-490.

The 66 kDa proteins were examined for the sequence similarity to other known proteins in database libraries. There were no other sequences related significantly to the 66 kDa proteins.

Example 9

Localization of the 66 kDa protein gene.

9.1 Separation of DNA by pulse-field agarose gel electrophoresis.

For the pulse-field AGE, the genomic DNA prepared from B. burgdorferi B31, B. afzelii ACAI and B. garinii Ip90 was recovered in 1 agarose blocks as previously described (Ferdows and Barbour, 1989). One-dimensional and pulse-field AGE were performed in 0.7% and 1% agarose, respectively, in TBE buffer. For the pulse-field AGE pulse times were 1 s for 9 h and then 5 s for 9 h at a constant current of 180 mA.

9.2 Southern blotting.

Following depurination, denaturation and neutralization of the gels, the DNA was transferred to Hybond-N membrane (Amersham, Buckinghamshire, UK) by the method of Southern (Sambrook et al. 1989), and cross-linked with UV light. Filters were prehybridized and hybridized for, respectively, 1 h and 4 h, and washed. The temperature was 37° C. for probing with degenerate oligonucleotide, end-labelled with /γ-³² P/dATP (Amersham, Buckinghamshire, UK), and 55° C. for probing with DNA fragment, radiolabelled by random primer technique (Amersham, Buckinghamshire, UK).

The hybridizing band corresponded to the position of the 1 Mbp linear chromosome of Lyme disease borreliae, cf. FIG. 3.

There was no significant signs of hybridization with the DNA from relapsing fever Borrelia species, B. hermsii, B. crocidurae, and B. hispanica (data not shown).

Furthermore, the 66 kDa protein gene being localized to the chromosome of borreliae shows a higher degree of conservation among Lyme disease associated borreliae contrary to the plasmid-encoded major outer surface proteins A, B, and C which exhibit a significant species and strain dependent genetic and antigenic polymorphism (Barbour 1986, Jonsson et al. 1992, Wilske et al. 1993).

Example 10

Expression of the 66 kDa protein from B. burgdorferi B31 in E. coli.

Two oligonucleotide primers,

    5'-GCA ATA TTT GCT GCA GCA GAT-3'                                                                     SEQ ID NO: 11                                              - 5'-GGC CTA AAG GAA TTC TTT TGC-3' SEQ ID NO: 12                      

were designed to anneal to the 5' end (devoid of the leader peptide sequence) and the 3' end of the 66 kDa protein gene from B. burgdorfer B31. The primers contained, respectively, PstI and EcoRI restriction sites, and were used to amplify the 66 kDa protein gene in the PCR. PCR amplification was performed using Ampli-Taq DNA polymerase (Perkin Elmer Cetus, Norwalk, Conn.). The PCR product was then treated with the mentioned restriction enzymes, purified by AGA and ligated into the T7 based expression vector PRSET (Invitrogen, San Diego, Calif.). The recombinant plasmid was then used to transform E. coli BL21 cells. E. coli BL21 cells containing the insert were grown and induced with by adding isopropyl-β-D-thiogalactopyranoside (IPTG) (Sigma, St. Louis, Mo.) to a final concentration of 1 mM to express the introduced 66 kDa protein gene. The 66 kDa protein gene product was subsequently identified by SDS-PAGE and Western blot with rabbit antiserum raised against the 66 kDa protein. FIG. 4 show the southern blot.

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    __________________________________________________________________________     #             SEQUENCE LISTING                                                    - -  - - (1) GENERAL INFORMATION:                                              - -    (iii) NUMBER OF SEQUENCES: 14                                           - -  - - (2) INFORMATION FOR SEQ ID NO: 1:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 20 amino - #acids                                                  (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: peptide                                            - -    (iii) HYPOTHETICAL: NO                                                  - -      (v) FRAGMENT TYPE: N-terminal                                         - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrelia - #afzelii                                              (B) STRAIN: ACAI                                                      - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #1:                            - - Ala Asp Ala Leu Lys Glu Lys Asp Ile Phe Ly - #s Ile Asn Pro Gly         Ile                                                                              1               5   - #                10  - #                15               - - Pro Asp Phe Gly                                                                       20                                                                  - -  - - (2) INFORMATION FOR SEQ ID NO: 2:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 24 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA                                                - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #2:                            - - GAAAAAGATA TWTTTAAAAT WAAT          - #                  - #                     24                                                                       - -  - - (2) INFORMATION FOR SEQ ID NO: 3:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 2075 base - #pairs                                                 (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrelia - #burgdorferi                                          (B) STRAIN: B31                                                       - -    (vii) IMMEDIATE SOURCE:                                                          (B) CLONE: pJB-102                                                    - -     (ix) FEATURE:                                                                   (A) NAME/KEY: CDS                                                              (B) LOCATION: 109..1914                                               - -     (ix) FEATURE:                                                                   (A) NAME/KEY: sig.sub.-- - #peptide                                            (B) LOCATION: 109..120                                                         (D) OTHER INFORMATION: - #/partial                                                  /label= - #partial                                               - -     (ix) FEATURE:                                                                   (A) NAME/KEY: mat.sub.-- - #peptide                                            (B) LOCATION: 121..1911                                               - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #3:                            - - GCTGGCGGAA GGGGGATGTG CTGCAAGGCG ATTAAGTTGG GTAACGCCAG GG -              #TTTTCCCA     60                                                                  - - GTCACGACGT TGTAAAACGA CGGCCAGTGC CAAGCTTGCA TGCCTGCA GCA - #ATA         TTT     117                                                                                        - #                  - #                 Ala - # Ile       Phe                                                                                                - #                  - #                  - #-4              - - GCA GCA GAC GCA TTA AAG GAA AAA GAT ATA TT - #T AAA ATA AAC CCA TGG           165                                                                        Ala Ala Asp Ala Leu Lys Glu Lys Asp Ile Ph - #e Lys Ile Asn Pro Trp                  1            - #   5               - #   10               - #   15        - - ATG CCA ACA TTT GGA TTT GAA AAC ACA AGT GA - #A TTC AGA TTA GAT ATG           213                                                                        Met Pro Thr Phe Gly Phe Glu Asn Thr Ser Gl - #u Phe Arg Leu Asp Met                             20 - #                 25 - #                 30               - - GAC GAG CTT GTT CCT GGG TTT GAA AAC AAA AG - #C AAA ATT ACC ATT AAG           261                                                                        Asp Glu Leu Val Pro Gly Phe Glu Asn Lys Se - #r Lys Ile Thr Ile Lys                         35     - #             40     - #             45                   - - CTT AAA CCA TTT GAA GCT AAT CCC GAA TTA GG - #C AAA GAC GAT CCA TTC           309                                                                        Leu Lys Pro Phe Glu Ala Asn Pro Glu Leu Gl - #y Lys Asp Asp Pro Phe                     50         - #         55         - #         60                       - - TCA GCT TAC ATT AAG GTA GAA GAT CTT GCA CT - #A AAA GCG GAA GGC AAA           357                                                                        Ser Ala Tyr Ile Lys Val Glu Asp Leu Ala Le - #u Lys Ala Glu Gly Lys                 65             - #     70             - #     75                           - - AAA GGC GAT CAA TTT AAA ATT GAC GTG GGA GA - #T ATT ACA GCC CAA ATC           405                                                                        Lys Gly Asp Gln Phe Lys Ile Asp Val Gly As - #p Ile Thr Ala Gln Ile             80                 - # 85                 - # 90                 - # 95        - - AAT ATG TAC GAT TTT TTT ATT AAA ATA AGT AC - #T ATG ACA GAT TTT GAC           453                                                                        Asn Met Tyr Asp Phe Phe Ile Lys Ile Ser Th - #r Met Thr Asp Phe Asp                            100  - #               105  - #               110               - - TTT AAT AAA GAG TCT TTA TTT AGT TTT GCA CC - #T ATG ACT GGA TTT AAA           501                                                                        Phe Asn Lys Glu Ser Leu Phe Ser Phe Ala Pr - #o Met Thr Gly Phe Lys                        115      - #           120      - #           125                   - - AGC ACT TAC TAT GGA TTC CCA AGC AAT GAT AG - #G GCA GTA AGA GGG ACA           549                                                                        Ser Thr Tyr Tyr Gly Phe Pro Ser Asn Asp Ar - #g Ala Val Arg Gly Thr                    130          - #       135          - #       140                       - - ATT CTT GCA AGA GGT ACT TCT AAA AAC ATA GG - #A ACA ATT CAG CTG GGA           597                                                                        Ile Leu Ala Arg Gly Thr Ser Lys Asn Ile Gl - #y Thr Ile Gln Leu Gly                145              - #   150              - #   155                           - - TAC AAA CTC CCA AAA CTC GAC CTT ACA TTT GC - #A ATA GGG GGA ACA GGC           645                                                                        Tyr Lys Leu Pro Lys Leu Asp Leu Thr Phe Al - #a Ile Gly Gly Thr Gly            160                 1 - #65                 1 - #70                 1 -       #75                                                                               - - ACG GGT AAC AGA AAT CAA GAG AAT GAC AAA GA - #C ACT CCA TAC AAT         AAA      693                                                                     Thr Gly Asn Arg Asn Gln Glu Asn Asp Lys As - #p Thr Pro Tyr Asn Lys                           180  - #               185  - #               190               - - ACA TAT CAA GGA ATC CTT TAT GGA ATT CAA GC - #A ACA TGG AAA CCA ATA           741                                                                        Thr Tyr Gln Gly Ile Leu Tyr Gly Ile Gln Al - #a Thr Trp Lys Pro Ile                        195      - #           200      - #           205                   - - AAA AAT CTA CTT GAT CAA AAC GAA GAT ACT AA - #A TCT GTA ATT GCA GAA           789                                                                        Lys Asn Leu Leu Asp Gln Asn Glu Asp Thr Ly - #s Ser Val Ile Ala Glu                    210          - #       215          - #       220                       - - ACA CCT TTT GAA TTA AAT TTT GGC TTG TCA GG - #A GCC TAT GGA AAC GAG           837                                                                        Thr Pro Phe Glu Leu Asn Phe Gly Leu Ser Gl - #y Ala Tyr Gly Asn Glu                225              - #   230              - #   235                           - - ACA TTC AAT AAT TCA TCA ATA ACA TAC TCT TT - #A AAA GAT AAA TCC GTA           885                                                                        Thr Phe Asn Asn Ser Ser Ile Thr Tyr Ser Le - #u Lys Asp Lys Ser Val            240                 2 - #45                 2 - #50                 2 -       #55                                                                               - - GTT GGC AAC GAT TTA TTG AGC CCA ACT TTA TC - #A AAT TCT GCA ATT         TTA      933                                                                     Val Gly Asn Asp Leu Leu Ser Pro Thr Leu Se - #r Asn Ser Ala Ile Leu                           260  - #               265  - #               270               - - GCA TCT TTT GGA GCT AAA TAT AAG CTT GGA TT - #A ACA AAA ATA AAC GAT           981                                                                        Ala Ser Phe Gly Ala Lys Tyr Lys Leu Gly Le - #u Thr Lys Ile Asn Asp                        275      - #           280      - #           285                   - - AAA AAT ACC TAT CTT ATT TTG CAA ATG GGA AC - #T GAT TTT GGA ATA GAT          1029                                                                        Lys Asn Thr Tyr Leu Ile Leu Gln Met Gly Th - #r Asp Phe Gly Ile Asp                    290          - #       295          - #       300                       - - CCT TTT GCA AGC GAT TTT TCT ATA TTT GGA CA - #C ATC TCA AAA GCA GCG          1077                                                                        Pro Phe Ala Ser Asp Phe Ser Ile Phe Gly Hi - #s Ile Ser Lys Ala Ala                305              - #   310              - #   315                           - - AAT TTC AAA AAA GAA ACA CCC TCA GAT CCT AA - #C AAA AAA GCT GAA ATA          1125                                                                        Asn Phe Lys Lys Glu Thr Pro Ser Asp Pro As - #n Lys Lys Ala Glu Ile            320                 3 - #25                 3 - #30                 3 -       #35                                                                               - - TTT GAT CCA AAT GGC AAT GCT CTT AAT TTC AG - #C AAA AAC ACA GAA         TTG     1173                                                                     Phe Asp Pro Asn Gly Asn Ala Leu Asn Phe Se - #r Lys Asn Thr Glu Leu                           340  - #               345  - #               350               - - GGC ATT GCA TTT TCA ACA GGA GCA AGT ATA GG - #T TTT GCT TGG AAT AAA          1221                                                                        Gly Ile Ala Phe Ser Thr Gly Ala Ser Ile Gl - #y Phe Ala Trp Asn Lys                        355      - #           360      - #           365                   - - GAT ACC GGT GAA AAA GAA TCC TGG GCG ATT AA - #A GGA TCT GAT TCC TAC          1269                                                                        Asp Thr Gly Glu Lys Glu Ser Trp Ala Ile Ly - #s Gly Ser Asp Ser Tyr                    370          - #       375          - #       380                       - - AGT ACA AGA CTC TTT GGA GAA CAA GAC AAA AA - #A TCT GGA GTT GCA TTG          1317                                                                        Ser Thr Arg Leu Phe Gly Glu Gln Asp Lys Ly - #s Ser Gly Val Ala Leu                385              - #   390              - #   395                           - - GGA ATA AGC TAT GGA CAA AAC CTT TAC AGA TC - #T AAA GAT ACA GAA AAA          1365                                                                        Gly Ile Ser Tyr Gly Gln Asn Leu Tyr Arg Se - #r Lys Asp Thr Glu Lys            400                 4 - #05                 4 - #10                 4 -       #15                                                                               - - AGA TTA AAA ACC ATA TCT GAA AAT GCA TTT CA - #A AGC TTA AAT GTT         GAA     1413                                                                     Arg Leu Lys Thr Ile Ser Glu Asn Ala Phe Gl - #n Ser Leu Asn Val Glu                           420  - #               425  - #               430               - - ATT TCA AGC TAT GAA GAC AAC AAA AAA GGG AT - #T ATA AAT GGA TTA GGA          1461                                                                        Ile Ser Ser Tyr Glu Asp Asn Lys Lys Gly Il - #e Ile Asn Gly Leu Gly                        435      - #           440      - #           445                   - - TGG ATA ACA TCT ATC GGT CTT TAC GAT ATT TT - #A AGA CAA AAA TCT GTA          1509                                                                        Trp Ile Thr Ser Ile Gly Leu Tyr Asp Ile Le - #u Arg Gln Lys Ser Val                    450          - #       455          - #       460                       - - GAA AAC TAT CCT ACA ACA ATT TCA AGC ACC AC - #T GAA AAC AAT CAA ACT          1557                                                                        Glu Asn Tyr Pro Thr Thr Ile Ser Ser Thr Th - #r Glu Asn Asn Gln Thr                465              - #   470              - #   475                           - - GAA CAA AGT TCA ACA AGC ACA AAG ACC ACA AC - #C CCT AAT CTG ACA TTT          1605                                                                        Glu Gln Ser Ser Thr Ser Thr Lys Thr Thr Th - #r Pro Asn Leu Thr Phe            480                 4 - #85                 4 - #90                 4 -       #95                                                                               - - GAA GAT GCA ATG AAA CTC GGC TTG GCC TTA TA - #T CTT GAT TAT GCA         ATT     1653                                                                     Glu Asp Ala Met Lys Leu Gly Leu Ala Leu Ty - #r Leu Asp Tyr Ala Ile                           500  - #               505  - #               510               - - CCA ATA GCA TCC ATT TCA ACA GAA GCA TAT GT - #A GTA CCT TAC ATT GGA          1701                                                                        Pro Ile Ala Ser Ile Ser Thr Glu Ala Tyr Va - #l Val Pro Tyr Ile Gly                        515      - #           520      - #           525                   - - GCA TAC ATT TTA GGA CCT TCT AAT AAA CTC TC - #A AGC GAT GCT ACA AAA          1749                                                                        Ala Tyr Ile Leu Gly Pro Ser Asn Lys Leu Se - #r Ser Asp Ala Thr Lys                    530          - #       535          - #       540                       - - ATT TAT TTA AAA ACA GGA CTT AGC CTT GAA AA - #A CTA ATA AGA TTT ACA          1797                                                                        Ile Tyr Leu Lys Thr Gly Leu Ser Leu Glu Ly - #s Leu Ile Arg Phe Thr                545              - #   550              - #   555                           - - ACA ATT TCT CTT GGA TGG GAT TCA AAT AAC AT - #T ATA GAA CTT GCT AAT          1845                                                                        Thr Ile Ser Leu Gly Trp Asp Ser Asn Asn Il - #e Ile Glu Leu Ala Asn            560                 5 - #65                 5 - #70                 5 -       #75                                                                               - - AAA AAC ACA AAT AAT GCT GCT ATT GGA AGT GC - #T TTC TTG CAA TTC         AAA     1893                                                                     Lys Asn Thr Asn Asn Ala Ala Ile Gly Ser Al - #a Phe Leu Gln Phe Lys                           580  - #               585  - #               590               - - ATA GCC TAC AGC GGA AGC TAACAGCAAA AGAAGGGCTT TG - #GCCCTTCT                 1941                                                                        Ile Ala Tyr Ser Gly Ser                                                                    595                                                                 - - TTTTTATCTT TAAAAACAAT TGGGATTACC TTATATTTCT TTCCTTGCAA AT -              #TTTTTCAT   2001                                                                  - - AAGCATCTTG AATTTTTATA AATTTATCAT TTGCATCTTT TTGTCTTACA GG -             #ATCATTTG   2061                                                                  - - CAAACTTATC AGGA              - #                  - #                       - #   2075                                                                   - -  - - (2) INFORMATION FOR SEQ ID NO: 4:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 601 amino - #acids                                                 (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #4:                            - - Ala Ile Phe Ala Ala Asp Ala Leu Lys Glu Ly - #s Asp Ile Phe Lys Ile        -4               1  - #             5     - #             10                   - - Asn Pro Trp Met Pro Thr Phe Gly Phe Glu As - #n Thr Ser Glu Phe Arg                15         - #         20         - #         25                       - - Leu Asp Met Asp Glu Leu Val Pro Gly Phe Gl - #u Asn Lys Ser Lys Ile            30             - #     35             - #     40                           - - Thr Ile Lys Leu Lys Pro Phe Glu Ala Asn Pr - #o Glu Leu Gly Lys Asp        45                 - # 50                 - # 55                 - # 60        - - Asp Pro Phe Ser Ala Tyr Ile Lys Val Glu As - #p Leu Ala Leu Lys Ala                        65 - #                 70 - #                 75               - - Glu Gly Lys Lys Gly Asp Gln Phe Lys Ile As - #p Val Gly Asp Ile Thr                    80     - #             85     - #             90                   - - Ala Gln Ile Asn Met Tyr Asp Phe Phe Ile Ly - #s Ile Ser Thr Met Thr                95         - #        100         - #        105                       - - Asp Phe Asp Phe Asn Lys Glu Ser Leu Phe Se - #r Phe Ala Pro Met Thr           110              - #   115              - #   120                           - - Gly Phe Lys Ser Thr Tyr Tyr Gly Phe Pro Se - #r Asn Asp Arg Ala Val       125                 1 - #30                 1 - #35                 1 -       #40                                                                               - - Arg Gly Thr Ile Leu Ala Arg Gly Thr Ser Ly - #s Asn Ile Gly Thr         Ile                                                                                              145  - #               150  - #               155              - - Gln Leu Gly Tyr Lys Leu Pro Lys Leu Asp Le - #u Thr Phe Ala Ile Gly                   160      - #           165      - #           170                   - - Gly Thr Gly Thr Gly Asn Arg Asn Gln Glu As - #n Asp Lys Asp Thr Pro               175          - #       180          - #       185                       - - Tyr Asn Lys Thr Tyr Gln Gly Ile Leu Tyr Gl - #y Ile Gln Ala Thr Trp           190              - #   195              - #   200                           - - Lys Pro Ile Lys Asn Leu Leu Asp Gln Asn Gl - #u Asp Thr Lys Ser Val       205                 2 - #10                 2 - #15                 2 -       #20                                                                               - - Ile Ala Glu Thr Pro Phe Glu Leu Asn Phe Gl - #y Leu Ser Gly Ala         Tyr                                                                                              225  - #               230  - #               235              - - Gly Asn Glu Thr Phe Asn Asn Ser Ser Ile Th - #r Tyr Ser Leu Lys Asp                   240      - #           245      - #           250                   - - Lys Ser Val Val Gly Asn Asp Leu Leu Ser Pr - #o Thr Leu Ser Asn Ser               255          - #       260          - #       265                       - - Ala Ile Leu Ala Ser Phe Gly Ala Lys Tyr Ly - #s Leu Gly Leu Thr Lys           270              - #   275              - #   280                           - - Ile Asn Asp Lys Asn Thr Tyr Leu Ile Leu Gl - #n Met Gly Thr Asp Phe       285                 2 - #90                 2 - #95                 3 -       #00                                                                               - - Gly Ile Asp Pro Phe Ala Ser Asp Phe Ser Il - #e Phe Gly His Ile         Ser                                                                                              305  - #               310  - #               315              - - Lys Ala Ala Asn Phe Lys Lys Glu Thr Pro Se - #r Asp Pro Asn Lys Lys                   320      - #           325      - #           330                   - - Ala Glu Ile Phe Asp Pro Asn Gly Asn Ala Le - #u Asn Phe Ser Lys Asn               335          - #       340          - #       345                       - - Thr Glu Leu Gly Ile Ala Phe Ser Thr Gly Al - #a Ser Ile Gly Phe Ala           350              - #   355              - #   360                           - - Trp Asn Lys Asp Thr Gly Glu Lys Glu Ser Tr - #p Ala Ile Lys Gly Ser       365                 3 - #70                 3 - #75                 3 -       #80                                                                               - - Asp Ser Tyr Ser Thr Arg Leu Phe Gly Glu Gl - #n Asp Lys Lys Ser         Gly                                                                                              385  - #               390  - #               395              - - Val Ala Leu Gly Ile Ser Tyr Gly Gln Asn Le - #u Tyr Arg Ser Lys Asp                   400      - #           405      - #           410                   - - Thr Glu Lys Arg Leu Lys Thr Ile Ser Glu As - #n Ala Phe Gln Ser Leu               415          - #       420          - #       425                       - - Asn Val Glu Ile Ser Ser Tyr Glu Asp Asn Ly - #s Lys Gly Ile Ile Asn           430              - #   435              - #   440                           - - Gly Leu Gly Trp Ile Thr Ser Ile Gly Leu Ty - #r Asp Ile Leu Arg Gln       445                 4 - #50                 4 - #55                 4 -       #60                                                                               - - Lys Ser Val Glu Asn Tyr Pro Thr Thr Ile Se - #r Ser Thr Thr Glu         Asn                                                                                              465  - #               470  - #               475              - - Asn Gln Thr Glu Gln Ser Ser Thr Ser Thr Ly - #s Thr Thr Thr Pro Asn                   480      - #           485      - #           490                   - - Leu Thr Phe Glu Asp Ala Met Lys Leu Gly Le - #u Ala Leu Tyr Leu Asp               495          - #       500          - #       505                       - - Tyr Ala Ile Pro Ile Ala Ser Ile Ser Thr Gl - #u Ala Tyr Val Val Pro           510              - #   515              - #   520                           - - Tyr Ile Gly Ala Tyr Ile Leu Gly Pro Ser As - #n Lys Leu Ser Ser Asp       525                 5 - #30                 5 - #35                 5 -       #40                                                                               - - Ala Thr Lys Ile Tyr Leu Lys Thr Gly Leu Se - #r Leu Glu Lys Leu         Ile                                                                                              545  - #               550  - #               555              - - Arg Phe Thr Thr Ile Ser Leu Gly Trp Asp Se - #r Asn Asn Ile Ile Glu                   560      - #           565      - #           570                   - - Leu Ala Asn Lys Asn Thr Asn Asn Ala Ala Il - #e Gly Ser Ala Phe Leu               575          - #       580          - #       585                       - - Gln Phe Lys Ile Ala Tyr Ser Gly Ser                                           590              - #   595                                                  - -  - - (2) INFORMATION FOR SEQ ID NO: 5:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 2264 base - #pairs                                                 (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrelia - #afzelii                                              (B) STRAIN: ACAI                                                      - -    (vii) IMMEDIATE SOURCE:                                                          (B) CLONE: pJB-104                                                    - -     (ix) FEATURE:                                                                   (A) NAME/KEY: CDS                                                              (B) LOCATION: 303..2162                                               - -     (ix) FEATURE:                                                                   (A) NAME/KEY: sig.sub.-- - #peptide                                            (B) LOCATION: 303..365                                                - -     (ix) FEATURE:                                                                   (A) NAME/KEY: mat.sub.-- - #peptide                                            (B) LOCATION: 366..2159                                               - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #5:                            - - TCAAAAACAA TAACTTACGC TTTATACTAC ATTCTAGCAA CAGGATTACT GG -              #TTTATTTA     60                                                                  - - GTATAAATTA ATCATTTAAA ATAAATAAGA TTAGTTGACA ATACAATTAA TC -             #TTATTTAT    120                                                                  - - AAATTTGAAT AGTATAAAAT CACAAATACC AATATGATAT TGAATTTTTA TC -             #TAATAGTT    180                                                                  - - TTAATATTGT ATACATGTTA TTATGTACAA TAAGTAATAT GTATTATATA TA -             #TATTATTA    240                                                                  - - AGACGTTTAA AAAATAACTA AAACTAATAA AAAGTTTATA GTTACAACAG GA -             #AGGTATAA    300                                                                  - - TT ATG AAA AAT CAT ATT TTA TAT AAA TTA ATT - # ATA TTT TTA ACC ACA            347                                                                          Met Lys Asn His Ile Leu Tyr Lys Leu - #Ile Ile Phe Leu Thr Thr                 -21 -20             - #    -15             - #    -10                        - - TCT GCA GCA ATA TTT GCA GCA GAC GCA TTA AA - #G GAA AAA GAT ATA TTT           395                                                                        Ser Ala Ala Ile Phe Ala Ala Asp Ala Leu Ly - #s Glu Lys Asp Ile Phe                 -5             - #      1            - #   5               - #   10        - - AAA ATA AAC CCG TGG ATA CCG ACA TTT GGA TT - #T GAA AAC ACA AGT GAA           443                                                                        Lys Ile Asn Pro Trp Ile Pro Thr Phe Gly Ph - #e Glu Asn Thr Ser Glu                             15 - #                 20 - #                 25               - - TTC AGA TTT GAT ATG GAT GAA CTT GTC CCT GG - #G TTT GAA AAC AAA AGT           491                                                                        Phe Arg Phe Asp Met Asp Glu Leu Val Pro Gl - #y Phe Glu Asn Lys Ser                         30     - #             35     - #             40                   - - AAA ATT ACT ATT AAA CTT AAA CCA TTT GAA AC - #T AAT CCA GAA TTA GGC           539                                                                        Lys Ile Thr Ile Lys Leu Lys Pro Phe Glu Th - #r Asn Pro Glu Leu Gly                     45         - #         50         - #         55                       - - AAA GAC GAT CCA TTT TCA GCT TAC ATT AAA GT - #G GAA GAT CTT GCA TTA           587                                                                        Lys Asp Asp Pro Phe Ser Ala Tyr Ile Lys Va - #l Glu Asp Leu Ala Leu                 60             - #     65             - #     70                           - - AAA GCA GAA GGC AAA AAA GAC GCT CAA TTC AA - #A ATC GAT GTA GGA GAT           635                                                                        Lys Ala Glu Gly Lys Lys Asp Ala Gln Phe Ly - #s Ile Asp Val Gly Asp             75                 - # 80                 - # 85                 - # 90        - - ATA ACA GCC CAA ATT AAT ATA TAC GAT TTT TT - #T ATT AAA ATA AGT ACT           683                                                                        Ile Thr Ala Gln Ile Asn Ile Tyr Asp Phe Ph - #e Ile Lys Ile Ser Thr                             95 - #                100 - #                105               - - ATG ACG GAT TTT GAC TTT AAT AAA GAA TCT TT - #A TTT AGC TTT GCG CCT           731                                                                        Met Thr Asp Phe Asp Phe Asn Lys Glu Ser Le - #u Phe Ser Phe Ala Pro                        110      - #           115      - #           120                   - - ATG ACT GGA TTC AAA AGC ACT TAC TAT GGA TT - #C CCA AGT AAT GAT AGA           779                                                                        Met Thr Gly Phe Lys Ser Thr Tyr Tyr Gly Ph - #e Pro Ser Asn Asp Arg                    125          - #       130          - #       135                       - - GCA GTA AGA GGG ACA ATT CTT GCA AGA GGT AC - #T TCT AAA AAC ATA GGA           827                                                                        Ala Val Arg Gly Thr Ile Leu Ala Arg Gly Th - #r Ser Lys Asn Ile Gly                140              - #   145              - #   150                           - - ACA ATT CAA CTG GGA TAC AAA CTC CCA CAA AT - #C GAC CTT ACA TTT GCA           875                                                                        Thr Ile Gln Leu Gly Tyr Lys Leu Pro Gln Il - #e Asp Leu Thr Phe Ala            155                 1 - #60                 1 - #65                 1 -       #70                                                                               - - ATA GGA GGA ACA GGC ACA GGT AAT AGA AAT CA - #A GAG AAT GAC AAA         GAC      923                                                                     Ile Gly Gly Thr Gly Thr Gly Asn Arg Asn Gl - #n Glu Asn Asp Lys Asp                           175  - #               180  - #               185               - - ACT CCA TAC AAT AAA ACC TAT CAA GGA ATC CT - #T TAT GGA ATT CAA GCA           971                                                                        Thr Pro Tyr Asn Lys Thr Tyr Gln Gly Ile Le - #u Tyr Gly Ile Gln Ala                        190      - #           195      - #           200                   - - ACA TGG AAG CCA ATA AAA AAT ATA CTT GAT CA - #A AAC GAA GAT ACT CAA          1019                                                                        Thr Trp Lys Pro Ile Lys Asn Ile Leu Asp Gl - #n Asn Glu Asp Thr Gln                    205          - #       210          - #       215                       - - TCT GTA ATT GCA GAA ACA CCT TTT GAA TTA AA - #C TTT GGC TTA TCA GGA          1067                                                                        Ser Val Ile Ala Glu Thr Pro Phe Glu Leu As - #n Phe Gly Leu Ser Gly                220              - #   225              - #   230                           - - GCT TAT GGA AAT GAA ACA TTC AAT AAT TCA TC - #A ATA ACA TAC TCT TTA          1115                                                                        Ala Tyr Gly Asn Glu Thr Phe Asn Asn Ser Se - #r Ile Thr Tyr Ser Leu            235                 2 - #40                 2 - #45                 2 -       #50                                                                               - - AAA GAT AAA TCC CTA ATT GGT AAC GAT TTA TT - #A AGC CCA ACT TTA         TCA     1163                                                                     Lys Asp Lys Ser Leu Ile Gly Asn Asp Leu Le - #u Ser Pro Thr Leu Ser                           255  - #               260  - #               265               - - AAT TCT GCA ATT TTG GCA TCT TTT GGA GCT CA - #A TAT AAG CTT GGA TTA          1211                                                                        Asn Ser Ala Ile Leu Ala Ser Phe Gly Ala Gl - #n Tyr Lys Leu Gly Leu                        270      - #           275      - #           280                   - - ACA AAA ATC AAT AAT AAA AAT ACC TAT CTT AT - #T TTA CAA ATG GGT ACT          1259                                                                        Thr Lys Ile Asn Asn Lys Asn Thr Tyr Leu Il - #e Leu Gln Met Gly Thr                    285          - #       290          - #       295                       - - GAT TTT GGA ATA GAT CCT TTT GCA AGC GAT TT - #T TCT GTA TTT GGA CAC          1307                                                                        Asp Phe Gly Ile Asp Pro Phe Ala Ser Asp Ph - #e Ser Val Phe Gly His                300              - #   305              - #   310                           - - ATC TCA AAA GCA GCA AAT TTG AAA AAA GGA AT - #A TCT TTA GAT CCT AGT          1355                                                                        Ile Ser Lys Ala Ala Asn Leu Lys Lys Gly Il - #e Ser Leu Asp Pro Ser            315                 3 - #20                 3 - #25                 3 -       #30                                                                               - - AAA AAA GCC GAG GAT ATA TTT GAT CCA AAT GG - #C AAT GCC CTT AAT         TTC     1403                                                                     Lys Lys Ala Glu Asp Ile Phe Asp Pro Asn Gl - #y Asn Ala Leu Asn Phe                           335  - #               340  - #               345               - - AAT AAA AAT ACA GAA CTA GGC ATT GCA TTT TC - #A ACA GGA GCA AGC ATA          1451                                                                        Asn Lys Asn Thr Glu Leu Gly Ile Ala Phe Se - #r Thr Gly Ala Ser Ile                        350      - #           355      - #           360                   - - GGG CTT GCT TGG AAT AAA GAC GAC GGT GAA AA - #A GAA TCT TGG AAA GTT          1499                                                                        Gly Leu Ala Trp Asn Lys Asp Asp Gly Glu Ly - #s Glu Ser Trp Lys Val                    365          - #       370          - #       375                       - - AAA GGA TCT GAT TCC TAC AGT ACA AGA CTA TT - #T GGA GAA CAA GAC AAA          1547                                                                        Lys Gly Ser Asp Ser Tyr Ser Thr Arg Leu Ph - #e Gly Glu Gln Asp Lys                380              - #   385              - #   390                           - - AAA TCT GGA GTT GCA TTA GGA ATA AGC TAT GG - #G CAA AAT CTT TAC AGA          1595                                                                        Lys Ser Gly Val Ala Leu Gly Ile Ser Tyr Gl - #y Gln Asn Leu Tyr Arg            395                 4 - #00                 4 - #05                 4 -       #10                                                                               - - TCT AAA GAT ACA GAA AAA AGA TTA AAA ACC AT - #A TCT GAA AAT GCA         TTT     1643                                                                     Ser Lys Asp Thr Glu Lys Arg Leu Lys Thr Il - #e Ser Glu Asn Ala Phe                           415  - #               420  - #               425               - - CAA AGC TTA AAT GTT GAA ATT TCA AGC TAT GA - #A GAC AAT AAA AAG GGG          1691                                                                        Gln Ser Leu Asn Val Glu Ile Ser Ser Tyr Gl - #u Asp Asn Lys Lys Gly                        430      - #           435      - #           440                   - - CTT ATG AAT GGA CTG GGT TGG ATA ACA TCT AT - #C GGT CTT TAT GAT ATT          1739                                                                        Leu Met Asn Gly Leu Gly Trp Ile Thr Ser Il - #e Gly Leu Tyr Asp Ile                    445          - #       450          - #       455                       - - TTA AGA CAA AAA TCT GTA GAA AAC TAT CCT AC - #A TCA ACC TTA AGT GCT          1787                                                                        Leu Arg Gln Lys Ser Val Glu Asn Tyr Pro Th - #r Ser Thr Leu Ser Ala                460              - #   465              - #   470                           - - AAT GAG AAC AAT CAA GCT GGA CAA AGT TCA AC - #A GGC ACA CAA GCC ATA          1835                                                                        Asn Glu Asn Asn Gln Ala Gly Gln Ser Ser Th - #r Gly Thr Gln Ala Ile            475                 4 - #80                 4 - #85                 4 -       #90                                                                               - - ACA CCT AAT CTA ACA TTT GAA GAC GCA ATG AA - #A CTA GGC ATA GCT         TTA     1883                                                                     Thr Pro Asn Leu Thr Phe Glu Asp Ala Met Ly - #s Leu Gly Ile Ala Leu                           495  - #               500  - #               505               - - TAT CTT GAT TAT GCA ATT CCA ATA GAA TCC AT - #T TCA ACA GAA GCA TAT          1931                                                                        Tyr Leu Asp Tyr Ala Ile Pro Ile Glu Ser Il - #e Ser Thr Glu Ala Tyr                        510      - #           515      - #           520                   - - GTA GTA CCA TAT ATT GGA GCA TAC CTT TTA GG - #A CCT TCT AAT AAA ATA          1979                                                                        Val Val Pro Tyr Ile Gly Ala Tyr Leu Leu Gl - #y Pro Ser Asn Lys Ile                    525          - #       530          - #       535                       - - TCA AGC GAT GCT ACA AAA ATT TAT TTA AAA AC - #A GGA CTT AGT CTT GAA          2027                                                                        Ser Ser Asp Ala Thr Lys Ile Tyr Leu Lys Th - #r Gly Leu Ser Leu Glu                540              - #   545              - #   550                           - - AAA CTA ATA AGA TTT ACA ACA ATT TCT CTT GG - #A TGG GAT TCA AAT AAT          2075                                                                        Lys Leu Ile Arg Phe Thr Thr Ile Ser Leu Gl - #y Trp Asp Ser Asn Asn            555                 5 - #60                 5 - #65                 5 -       #70                                                                               - - ATT ATA GAA CTT GCT AAT AAA AAC GCA AAT AA - #T GCT GCT ATT GGC         AGT     2123                                                                     Ile Ile Glu Leu Ala Asn Lys Asn Ala Asn As - #n Ala Ala Ile Gly Ser                           575  - #               580  - #               585               - - GCT TTC TTG CAA TTC AAA ATA GCC TAC AGC GG - #A AGC TAACAGCAAA               2169                                                                        Ala Phe Leu Gln Phe Lys Ile Ala Tyr Ser Gl - #y Ser                                        590      - #           595                                          - - AGAAGGGCCA AAAGCCCTTC TTTTTTATCT TTAAAAACAA ATTAATCAAT TA -              #ATTACTTA   2229                                                                  - - ATATTTCTTT CTTTGCAAAT CTTTTCATAA GCATC       - #                        - #     2264                                                                      - -  - - (2) INFORMATION FOR SEQ ID NO: 6:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 619 amino - #acids                                                 (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #6:                            - - Met Lys Asn His Ile Leu Tyr Lys Leu Ile Il - #e Phe Leu Thr Thr         Ser                                                                             21 -20                - # -15                - # -10                             - - Ala Ala Ile Phe Ala Ala Asp Ala Leu Lys Gl - #u Lys Asp Ile Phe         Lys                                                                               -5                 - #  1               5 - #                 10              - - Ile Asn Pro Trp Ile Pro Thr Phe Gly Phe Gl - #u Asn Thr Ser Glu Phe                    15     - #             20     - #             25                   - - Arg Phe Asp Met Asp Glu Leu Val Pro Gly Ph - #e Glu Asn Lys Ser Lys                30         - #         35         - #         40                       - - Ile Thr Ile Lys Leu Lys Pro Phe Glu Thr As - #n Pro Glu Leu Gly Lys            45             - #     50             - #     55                           - - Asp Asp Pro Phe Ser Ala Tyr Ile Lys Val Gl - #u Asp Leu Ala Leu Lys        60                 - # 65                 - # 70                 - # 75        - - Ala Glu Gly Lys Lys Asp Ala Gln Phe Lys Il - #e Asp Val Gly Asp Ile                        80 - #                 85 - #                 90               - - Thr Ala Gln Ile Asn Ile Tyr Asp Phe Phe Il - #e Lys Ile Ser Thr Met                    95     - #            100     - #            105                   - - Thr Asp Phe Asp Phe Asn Lys Glu Ser Leu Ph - #e Ser Phe Ala Pro Met               110          - #       115          - #       120                       - - Thr Gly Phe Lys Ser Thr Tyr Tyr Gly Phe Pr - #o Ser Asn Asp Arg Ala           125              - #   130              - #   135                           - - Val Arg Gly Thr Ile Leu Ala Arg Gly Thr Se - #r Lys Asn Ile Gly Thr       140                 1 - #45                 1 - #50                 1 -       #55                                                                               - - Ile Gln Leu Gly Tyr Lys Leu Pro Gln Ile As - #p Leu Thr Phe Ala         Ile                                                                                              160  - #               165  - #               170              - - Gly Gly Thr Gly Thr Gly Asn Arg Asn Gln Gl - #u Asn Asp Lys Asp Thr                   175      - #           180      - #           185                   - - Pro Tyr Asn Lys Thr Tyr Gln Gly Ile Leu Ty - #r Gly Ile Gln Ala Thr               190          - #       195          - #       200                       - - Trp Lys Pro Ile Lys Asn Ile Leu Asp Gln As - #n Glu Asp Thr Gln Ser           205              - #   210              - #   215                           - - Val Ile Ala Glu Thr Pro Phe Glu Leu Asn Ph - #e Gly Leu Ser Gly Ala       220                 2 - #25                 2 - #30                 2 -       #35                                                                               - - Tyr Gly Asn Glu Thr Phe Asn Asn Ser Ser Il - #e Thr Tyr Ser Leu         Lys                                                                                              240  - #               245  - #               250              - - Asp Lys Ser Leu Ile Gly Asn Asp Leu Leu Se - #r Pro Thr Leu Ser Asn                   255      - #           260      - #           265                   - - Ser Ala Ile Leu Ala Ser Phe Gly Ala Gln Ty - #r Lys Leu Gly Leu Thr               270          - #       275          - #       280                       - - Lys Ile Asn Asn Lys Asn Thr Tyr Leu Ile Le - #u Gln Met Gly Thr Asp           285              - #   290              - #   295                           - - Phe Gly Ile Asp Pro Phe Ala Ser Asp Phe Se - #r Val Phe Gly His Ile       300                 3 - #05                 3 - #10                 3 -       #15                                                                               - - Ser Lys Ala Ala Asn Leu Lys Lys Gly Ile Se - #r Leu Asp Pro Ser         Lys                                                                                              320  - #               325  - #               330              - - Lys Ala Glu Asp Ile Phe Asp Pro Asn Gly As - #n Ala Leu Asn Phe Asn                   335      - #           340      - #           345                   - - Lys Asn Thr Glu Leu Gly Ile Ala Phe Ser Th - #r Gly Ala Ser Ile Gly               350          - #       355          - #       360                       - - Leu Ala Trp Asn Lys Asp Asp Gly Glu Lys Gl - #u Ser Trp Lys Val Lys           365              - #   370              - #   375                           - - Gly Ser Asp Ser Tyr Ser Thr Arg Leu Phe Gl - #y Glu Gln Asp Lys Lys       380                 3 - #85                 3 - #90                 3 -       #95                                                                               - - Ser Gly Val Ala Leu Gly Ile Ser Tyr Gly Gl - #n Asn Leu Tyr Arg         Ser                                                                                              400  - #               405  - #               410              - - Lys Asp Thr Glu Lys Arg Leu Lys Thr Ile Se - #r Glu Asn Ala Phe Gln                   415      - #           420      - #           425                   - - Ser Leu Asn Val Glu Ile Ser Ser Tyr Glu As - #p Asn Lys Lys Gly Leu               430          - #       435          - #       440                       - - Met Asn Gly Leu Gly Trp Ile Thr Ser Ile Gl - #y Leu Tyr Asp Ile Leu           445              - #   450              - #   455                           - - Arg Gln Lys Ser Val Glu Asn Tyr Pro Thr Se - #r Thr Leu Ser Ala Asn       460                 4 - #65                 4 - #70                 4 -       #75                                                                               - - Glu Asn Asn Gln Ala Gly Gln Ser Ser Thr Gl - #y Thr Gln Ala Ile         Thr                                                                                              480  - #               485  - #               490              - - Pro Asn Leu Thr Phe Glu Asp Ala Met Lys Le - #u Gly Ile Ala Leu Tyr                   495      - #           500      - #           505                   - - Leu Asp Tyr Ala Ile Pro Ile Glu Ser Ile Se - #r Thr Glu Ala Tyr Val               510          - #       515          - #       520                       - - Val Pro Tyr Ile Gly Ala Tyr Leu Leu Gly Pr - #o Ser Asn Lys Ile Ser           525              - #   530              - #   535                           - - Ser Asp Ala Thr Lys Ile Tyr Leu Lys Thr Gl - #y Leu Ser Leu Glu Lys       540                 5 - #45                 5 - #50                 5 -       #55                                                                               - - Leu Ile Arg Phe Thr Thr Ile Ser Leu Gly Tr - #p Asp Ser Asn Asn         Ile                                                                                              560  - #               565  - #               570              - - Ile Glu Leu Ala Asn Lys Asn Ala Asn Asn Al - #a Ala Ile Gly Ser Ala                   575      - #           580      - #           585                   - - Phe Leu Gln Phe Lys Ile Ala Tyr Ser Gly Se - #r                                   590          - #       595                                              - -  - - (2) INFORMATION FOR SEQ ID NO: 7:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 2547 base - #pairs                                                 (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrlia g - #arinii                                              (B) STRAIN: Ip90                                                      - -    (vii) IMMEDIATE SOURCE:                                                          (B) CLONE: pJB-101                                                    - -     (ix) FEATURE:                                                                   (A) NAME/KEY: CDS                                                              (B) LOCATION: 380..2245                                               - -     (ix) FEATURE:                                                                   (A) NAME/KEY: sig.sub.-- - #peptide                                            (B) LOCATION: 380..442                                                - -     (ix) FEATURE:                                                                   (A) NAME/KEY: mat.sub.-- - #peptide                                            (B) LOCATION: 443..2242                                               - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #7:                            - - AAGCTTTTGT CAAAAACAAT ACCTTACGCT TTATACTACA TTCTAGCAAC AG -              #GATTGCTA     60                                                                  - - GTTTATTTAG TATAAATTAA TCATTTAAAA TAAATAAGAT TAATTTACAA TA -             #AAATTAAT    120                                                                  - - CTTATTTATA GATTTGAATA ATATAAAAAT CATAAAATAA TAATATGATC TT -             #GAATTTTT    180                                                                  - - ACCTAATATT TTAATATTAT ATACATGTTA TATATATATT ATTATATGCA TA -             #ATAGCATG    240                                                                  - - TATATAATAT ATTTTAGCAT AATAGCATGT ATATAATATA TTTTAGCATA AT -             #AGCATGTA    300                                                                  - - TATAATATAT TTTATTAATG CGTTTAATAA ATAACTAGAA CTAATAAAAA GT -             #TTATAGTT    360                                                                  - - ACAACAGGAA GGTATAATT ATG AAA AAT CAT ATT TTA TAT - # AAA TTA ATT        ATA     412                                                                                        - #   Met Lys Asn His Ile Leu Tyr Lys Leu - # Ile Ile                         - #   -21 -20             - #    -15                          - - TTT TTA ACT ACA TCT GTA GCA ATA TTT GCA GC - #A GCA GAT AAA TTA AAG           460                                                                        Phe Leu Thr Thr Ser Val Ala Ile Phe Ala Al - #a Ala Asp Lys Leu Lys           10                  - #-5                  - # 1               5                 - - GAA GAA GAT ATA TTT AAA ATA AAT CCA TGG AT - #A CCT ACA TTT GGA ATT           508                                                                        Glu Glu Asp Ile Phe Lys Ile Asn Pro Trp Il - #e Pro Thr Phe Gly Ile                         10     - #             15     - #             20                   - - GAA AAC ACA AGT GAG TTC AGA CTT GAT ATG GA - #T GAG CTT GTT CCT GGA           556                                                                        Glu Asn Thr Ser Glu Phe Arg Leu Asp Met As - #p Glu Leu Val Pro Gly                     25         - #         30         - #         35                       - - TTT GAA AAC AAA AGC AAA ATT ACT ATT AAA CT - #T AAA CCA TTT GAA GTT           604                                                                        Phe Glu Asn Lys Ser Lys Ile Thr Ile Lys Le - #u Lys Pro Phe Glu Val                 40             - #     45             - #     50                           - - AAT CCC GAA TTA GGC AAA GAC GAC CCA TTC TC - #A GCT TAC ATT AAG GTA           652                                                                        Asn Pro Glu Leu Gly Lys Asp Asp Pro Phe Se - #r Ala Tyr Ile Lys Val             55                 - # 60                 - # 65                 - # 70        - - GAA GAT CTT GCA TTA AAA GCG GAA GGT AAA AA - #A GGG GAT CCA TTT AAA           700                                                                        Glu Asp Leu Ala Leu Lys Ala Glu Gly Lys Ly - #s Gly Asp Pro Phe Lys                             75 - #                 80 - #                 85               - - ATT GAC GTA GGA GAC ATA ACA GCC CAA ATT AA - #T ATA TAC GAT TTT TTT           748                                                                        Ile Asp Val Gly Asp Ile Thr Ala Gln Ile As - #n Ile Tyr Asp Phe Phe                         90     - #             95     - #            100                   - - ATT AAG ATA AGC ACT ATG ACA GAT TTT GAC TT - #T AAT AAA GAA TCT TTA           796                                                                        Ile Lys Ile Ser Thr Met Thr Asp Phe Asp Ph - #e Asn Lys Glu Ser Leu                    105          - #       110          - #       115                       - - TTT AGT TTT GCG CCC ATG ACC GGA TTC AAA AG - #C ACT TAC TAC GGA TTT           844                                                                        Phe Ser Phe Ala Pro Met Thr Gly Phe Lys Se - #r Thr Tyr Tyr Gly Phe                120              - #   125              - #   130                           - - CCA AGC AAA GAC AGA ATA GTA AGA GGA ACA AT - #T CTT GCA AGA GGT GCT           892                                                                        Pro Ser Lys Asp Arg Ile Val Arg Gly Thr Il - #e Leu Ala Arg Gly Ala            135                 1 - #40                 1 - #45                 1 -       #50                                                                               - - TCT AAA AAC ATA GGA ACA ATT CAA ATG GGA TA - #C AAG CTC CCA CAA         ATA      940                                                                     Ser Lys Asn Ile Gly Thr Ile Gln Met Gly Ty - #r Lys Leu Pro Gln Ile                           155  - #               160  - #               165               - - GAC CTT ACA TTT GCA ATA GGG GGA ACA GGC AC - #A GGT AAC AGA AAT CAA           988                                                                        Asp Leu Thr Phe Ala Ile Gly Gly Thr Gly Th - #r Gly Asn Arg Asn Gln                        170      - #           175      - #           180                   - - GAG AAT GAC AAA GAC ACT CCA TAC AAT AAA AC - #C TAT AAA GGA ATA CTT          1036                                                                        Glu Asn Asp Lys Asp Thr Pro Tyr Asn Lys Th - #r Tyr Lys Gly Ile Leu                    185          - #       190          - #       195                       - - TAT GGG GTT CAA GCA ACA TGG AAG CCA ATA AA - #A AAT CTA CTT GAT AAA          1084                                                                        Tyr Gly Val Gln Ala Thr Trp Lys Pro Ile Ly - #s Asn Leu Leu Asp Lys                200              - #   205              - #   210                           - - AAC GAA GAT AAT CGA TCT GTA ATT GCA GAA AC - #A CCT TTT GAA TTA AAT          1132                                                                        Asn Glu Asp Asn Arg Ser Val Ile Ala Glu Th - #r Pro Phe Glu Leu Asn            215                 2 - #20                 2 - #25                 2 -       #30                                                                               - - TTT GGC TTA TCA GGA GCT TAT GGA AAT AAA AC - #A TTC AAT AAT TCA         TCA     1180                                                                     Phe Gly Leu Ser Gly Ala Tyr Gly Asn Lys Th - #r Phe Asn Asn Ser Ser                           235  - #               240  - #               245               - - ATA ACA TAC TCT TTA AAA GAT AAA TCT GTA GT - #T GGT AAC GAT TTA TTG          1228                                                                        Ile Thr Tyr Ser Leu Lys Asp Lys Ser Val Va - #l Gly Asn Asp Leu Leu                        250      - #           255      - #           260                   - - AGT CCA ACT TTA TCA AAT TCT GCA ATT TTA GC - #A TCT TTT GGA GCT CAA          1276                                                                        Ser Pro Thr Leu Ser Asn Ser Ala Ile Leu Al - #a Ser Phe Gly Ala Gln                    265          - #       270          - #       275                       - - TAT AAG CTT GGA TTA ACA AAA ATC AAC AAT AA - #A AAT ACC TAT CTT ATT          1324                                                                        Tyr Lys Leu Gly Leu Thr Lys Ile Asn Asn Ly - #s Asn Thr Tyr Leu Ile                280              - #   285              - #   290                           - - TTA CAA ATG GGT ACC GAT TTT GGA ATA GAT CC - #T TTT GCA AGC GAT TTT          1372                                                                        Leu Gln Met Gly Thr Asp Phe Gly Ile Asp Pr - #o Phe Ala Ser Asp Phe            295                 3 - #00                 3 - #05                 3 -       #10                                                                               - - TCT GTA TTT GGA CAC ATC TCA AAA GCA GCA AA - #T TCT AAA AAA GGA         ATA     1420                                                                     Ser Val Phe Gly His Ile Ser Lys Ala Ala As - #n Ser Lys Lys Gly Ile                           315  - #               320  - #               325               - - TCC GTA GAT CCT ATT AAA AAA GCC GAA GAT AT - #A TTT GAT CCA AAT GGC          1468                                                                        Ser Val Asp Pro Ile Lys Lys Ala Glu Asp Il - #e Phe Asp Pro Asn Gly                        330      - #           335      - #           340                   - - AAT GCT CTT AAT TTC AGT AAA AAT ACA GAG CT - #G GGC ATT GCA TTT TCA          1516                                                                        Asn Ala Leu Asn Phe Ser Lys Asn Thr Glu Le - #u Gly Ile Ala Phe Ser                    345          - #       350          - #       355                       - - ACA GGA GCA AGC ATA GGG CTT CTC TGG AAT AA - #A GAC GAC GGT GAA AAA          1564                                                                        Thr Gly Ala Ser Ile Gly Leu Leu Trp Asn Ly - #s Asp Asp Gly Glu Lys                360              - #   365              - #   370                           - - GAA TCT TGG AAG GTT AAG GGA GCT GAT TCC TA - #C AGT ACA AGA CTA TTT          1612                                                                        Glu Ser Trp Lys Val Lys Gly Ala Asp Ser Ty - #r Ser Thr Arg Leu Phe            375                 3 - #80                 3 - #85                 3 -       #90                                                                               - - GGA GAA CAA GAC AAA AAA TCT GGA GTT GCA TT - #A GGA ATA AGT TAT         GGA     1660                                                                     Gly Glu Gln Asp Lys Lys Ser Gly Val Ala Le - #u Gly Ile Ser Tyr Gly                           395  - #               400  - #               405               - - CAA AAT CTT TAT AGA TCC AAA GAT ACA GAA AA - #A AGA TTA AAA ACC ATA          1708                                                                        Gln Asn Leu Tyr Arg Ser Lys Asp Thr Glu Ly - #s Arg Leu Lys Thr Ile                        410      - #           415      - #           420                   - - TCC GAA AAT GCA TTT CAA AGC TTA AAT GTT GA - #A ATC TCA AGC TAT GAA          1756                                                                        Ser Glu Asn Ala Phe Gln Ser Leu Asn Val Gl - #u Ile Ser Ser Tyr Glu                    425          - #       430          - #       435                       - - GAC AAC AAA AAA GGA CTT ATG AAC GGA CTA GG - #A TGG ATA ACA TCT ATC          1804                                                                        Asp Asn Lys Lys Gly Leu Met Asn Gly Leu Gl - #y Trp Ile Thr Ser Ile                440              - #   445              - #   450                           - - GGT CTT TAT GAT ATT TTA AGA CAA AAA TCT GT - #A GAA AAC TAT CCC ACA          1852                                                                        Gly Leu Tyr Asp Ile Leu Arg Gln Lys Ser Va - #l Glu Asn Tyr Pro Thr            455                 4 - #60                 4 - #65                 4 -       #70                                                                               - - ACA ACA AGC TCA GCT GCT GAT GCA AAC AAT CA - #A GCC GGA CAA AGT         TCA     1900                                                                     Thr Thr Ser Ser Ala Ala Asp Ala Asn Asn Gl - #n Ala Gly Gln Ser Ser                           475  - #               480  - #               485               - - GGA AGC ACA CAA GCT ACA ACC CCT AAT CTA AC - #A TTT GAA GAC GCA ATG          1948                                                                        Gly Ser Thr Gln Ala Thr Thr Pro Asn Leu Th - #r Phe Glu Asp Ala Met                        490      - #           495      - #           500                   - - AAA CTC GGT ATA GCT TTA TAT CTT GAT TAT GC - #A ATT CCA ATA GAA TCC          1996                                                                        Lys Leu Gly Ile Ala Leu Tyr Leu Asp Tyr Al - #a Ile Pro Ile Glu Ser                    505          - #       510          - #       515                       - - ATT TCA ACA GAA GCA TAT GTA GTA CCT TAT AT - #T GGG GCA TAC CTT TTA          2044                                                                        Ile Ser Thr Glu Ala Tyr Val Val Pro Tyr Il - #e Gly Ala Tyr Leu Leu                520              - #   525              - #   530                           - - GGG CAT TTT AAT AAA ATC TCA AGC GAT GCT AC - #A AAA ATT TAT TTA AAG          2092                                                                        Gly His Phe Asn Lys Ile Ser Ser Asp Ala Th - #r Lys Ile Tyr Leu Lys            535                 5 - #40                 5 - #45                 5 -       #50                                                                               - - ACA GGA CTT AGT CTT GAA AAA CTA ATA AGA TT - #T ACA ACA ATT TCT         CTT     2140                                                                     Thr Gly Leu Ser Leu Glu Lys Leu Ile Arg Ph - #e Thr Thr Ile Ser Leu                           555  - #               560  - #               565               - - GGC TGG GAT TCA AAT AAC ATT ATA GAA CTT GC - #T AAT AAA AAC ACA AAT          2188                                                                        Gly Trp Asp Ser Asn Asn Ile Ile Glu Leu Al - #a Asn Lys Asn Thr Asn                        570      - #           575      - #           580                   - - AAT GCT GCC ATT GGT AGT GCT TTC TTG CAA TT - #C AAA ATA GCC TAC AGT          2236                                                                        Asn Ala Ala Ile Gly Ser Ala Phe Leu Gln Ph - #e Lys Ile Ala Tyr Ser                    585          - #       590          - #       595                       - - GGA AGC TAAAAGCAAA AGAAGGGCTT TAGGCCCTTC TTTTTTTATC TT - #TAAAAACA           2292                                                                        Gly Ser                                                                            600                                                                         - - AATTAATATT AATTACTTTA TATTTCTTTC TTTGCAAATC TTTTCATAAG CA -              #TCTTGAAT   2352                                                                  - - TTTAATAAAT TTATCATTTG CATCTTTTTG CCTTACAGGA TCATTTGCAA AC -             #CTGTCAGG   2412                                                                  - - ATGATATTTT ATAACAAGAC TTTTATAAGC CTTTTTAATC TCATCATCAC TA -             #GCACTATA   2472                                                                  - - GACTAACCCC AAAACACTAT AGGGATTTAC AATTTTAATA TTAATATCTT TA -             #TAAGCTTC   2532                                                                  - - ATAACCATCA GATTC              - #                  - #                       - #  2547                                                                   - -  - - (2) INFORMATION FOR SEQ ID NO: 8:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 621 amino - #acids                                                 (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #8:                            - - Met Lys Asn His Ile Leu Tyr Lys Leu Ile Il - #e Phe Leu Thr Thr Ser      21 -20                - # -15                - # -10                             - - Val Ala Ile Phe Ala Ala Ala Asp Lys Leu Ly - #s Glu Glu Asp Ile Phe        -5                 - #  1               5 - #                 10               - - Lys Ile Asn Pro Trp Ile Pro Thr Phe Gly Il - #e Glu Asn Thr Ser Glu                    15     - #             20     - #             25                   - - Phe Arg Leu Asp Met Asp Glu Leu Val Pro Gl - #y Phe Glu Asn Lys Ser                30         - #         35         - #         40                       - - Lys Ile Thr Ile Lys Leu Lys Pro Phe Glu Va - #l Asn Pro Glu Leu Gly            45             - #     50             - #     55                           - - Lys Asp Asp Pro Phe Ser Ala Tyr Ile Lys Va - #l Glu Asp Leu Ala Leu        60                 - # 65                 - # 70                 - # 75        - - Lys Ala Glu Gly Lys Lys Gly Asp Pro Phe Ly - #s Ile Asp Val Gly Asp                        80 - #                 85 - #                 90               - - Ile Thr Ala Gln Ile Asn Ile Tyr Asp Phe Ph - #e Ile Lys Ile Ser Thr                    95     - #            100     - #            105                   - - Met Thr Asp Phe Asp Phe Asn Lys Glu Ser Le - #u Phe Ser Phe Ala Pro               110          - #       115          - #       120                       - - Met Thr Gly Phe Lys Ser Thr Tyr Tyr Gly Ph - #e Pro Ser Lys Asp Arg           125              - #   130              - #   135                           - - Ile Val Arg Gly Thr Ile Leu Ala Arg Gly Al - #a Ser Lys Asn Ile Gly       140                 1 - #45                 1 - #50                 1 -       #55                                                                               - - Thr Ile Gln Met Gly Tyr Lys Leu Pro Gln Il - #e Asp Leu Thr Phe         Ala                                                                                              160  - #               165  - #               170              - - Ile Gly Gly Thr Gly Thr Gly Asn Arg Asn Gl - #n Glu Asn Asp Lys Asp                   175      - #           180      - #           185                   - - Thr Pro Tyr Asn Lys Thr Tyr Lys Gly Ile Le - #u Tyr Gly Val Gln Ala               190          - #       195          - #       200                       - - Thr Trp Lys Pro Ile Lys Asn Leu Leu Asp Ly - #s Asn Glu Asp Asn Arg           205              - #   210              - #   215                           - - Ser Val Ile Ala Glu Thr Pro Phe Glu Leu As - #n Phe Gly Leu Ser Gly       220                 2 - #25                 2 - #30                 2 -       #35                                                                               - - Ala Tyr Gly Asn Lys Thr Phe Asn Asn Ser Se - #r Ile Thr Tyr Ser         Leu                                                                                              240  - #               245  - #               250              - - Lys Asp Lys Ser Val Val Gly Asn Asp Leu Le - #u Ser Pro Thr Leu Ser                   255      - #           260      - #           265                   - - Asn Ser Ala Ile Leu Ala Ser Phe Gly Ala Gl - #n Tyr Lys Leu Gly Leu               270          - #       275          - #       280                       - - Thr Lys Ile Asn Asn Lys Asn Thr Tyr Leu Il - #e Leu Gln Met Gly Thr           285              - #   290              - #   295                           - - Asp Phe Gly Ile Asp Pro Phe Ala Ser Asp Ph - #e Ser Val Phe Gly His       300                 3 - #05                 3 - #10                 3 -       #15                                                                               - - Ile Ser Lys Ala Ala Asn Ser Lys Lys Gly Il - #e Ser Val Asp Pro         Ile                                                                                              320  - #               325  - #               330              - - Lys Lys Ala Glu Asp Ile Phe Asp Pro Asn Gl - #y Asn Ala Leu Asn Phe                   335      - #           340      - #           345                   - - Ser Lys Asn Thr Glu Leu Gly Ile Ala Phe Se - #r Thr Gly Ala Ser Ile               350          - #       355          - #       360                       - - Gly Leu Leu Trp Asn Lys Asp Asp Gly Glu Ly - #s Glu Ser Trp Lys Val           365              - #   370              - #   375                           - - Lys Gly Ala Asp Ser Tyr Ser Thr Arg Leu Ph - #e Gly Glu Gln Asp Lys       380                 3 - #85                 3 - #90                 3 -       #95                                                                               - - Lys Ser Gly Val Ala Leu Gly Ile Ser Tyr Gl - #y Gln Asn Leu Tyr         Arg                                                                                              400  - #               405  - #               410              - - Ser Lys Asp Thr Glu Lys Arg Leu Lys Thr Il - #e Ser Glu Asn Ala Phe                   415      - #           420      - #           425                   - - Gln Ser Leu Asn Val Glu Ile Ser Ser Tyr Gl - #u Asp Asn Lys Lys Gly               430          - #       435          - #       440                       - - Leu Met Asn Gly Leu Gly Trp Ile Thr Ser Il - #e Gly Leu Tyr Asp Ile           445              - #   450              - #   455                           - - Leu Arg Gln Lys Ser Val Glu Asn Tyr Pro Th - #r Thr Thr Ser Ser Ala       460                 4 - #65                 4 - #70                 4 -       #75                                                                               - - Ala Asp Ala Asn Asn Gln Ala Gly Gln Ser Se - #r Gly Ser Thr Gln         Ala                                                                                              480  - #               485  - #               490              - - Thr Thr Pro Asn Leu Thr Phe Glu Asp Ala Me - #t Lys Leu Gly Ile Ala                   495      - #           500      - #           505                   - - Leu Tyr Leu Asp Tyr Ala Ile Pro Ile Glu Se - #r Ile Ser Thr Glu Ala               510          - #       515          - #       520                       - - Tyr Val Val Pro Tyr Ile Gly Ala Tyr Leu Le - #u Gly His Phe Asn Lys           525              - #   530              - #   535                           - - Ile Ser Ser Asp Ala Thr Lys Ile Tyr Leu Ly - #s Thr Gly Leu Ser Leu       540                 5 - #45                 5 - #50                 5 -       #55                                                                               - - Glu Lys Leu Ile Arg Phe Thr Thr Ile Ser Le - #u Gly Trp Asp Ser         Asn                                                                                              560  - #               565  - #               570              - - Asn Ile Ile Glu Leu Ala Asn Lys Asn Thr As - #n Asn Ala Ala Ile Gly                   575      - #           580      - #           585                   - - Ser Ala Phe Leu Gln Phe Lys Ile Ala Tyr Se - #r Gly Ser                           590          - #       595          - #       600                       - -  - - (2) INFORMATION FOR SEQ ID NO: 9:                                     - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 64 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrlia b - #urgdorferi                                          (B) STRAIN: B31                                                       - -    (vii) IMMEDIATE SOURCE:                                                          (B) CLONE: pJB-105                                                    - -     (ix) FEATURE:                                                                   (A) NAME/KEY: CDS                                                              (B) LOCATION: 14..61                                                  - -     (ix) FEATURE:                                                                   (A) NAME/KEY: sig.sub.-- - #peptide                                            (B) LOCATION: 14..61                                                           (D) OTHER INFORMATION: - #/partial                                                  /label= - #partial                                               - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #9:                            - - GGAGGGTATA ATT ATG AAA AGC CAT ATT TTA TAT AA - #A TTA ATC ATA TTT             49                                                                                       Met Lys - #Ser His Ile Leu Tyr Lys Leu Ile Ile Phe                               1 - #              5    - #              10                    - - TTA ACC ACA TCT GCA           - #                  - #                       - #    64                                                                   Leu Thr Thr Ser                                                                         15                                                                     - -  - - (2) INFORMATION FOR SEQ ID NO: 10:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 16 amino - #acids                                                  (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #10:                           - - Met Lys Ser His Ile Leu Tyr Lys Leu Ile Il - #e Phe Leu Thr Thr Ser         1               5 - #                 10 - #                 15               - -  - - (2) INFORMATION FOR SEQ ID NO: 11:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 21 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA                                                - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #11:                           - - GCAATATTTG CTGCAGCAGA T           - #                  - #                       - #21                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 12:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 21 base - #pairs                                                   (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: single                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA                                                - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #12:                           - - GGCCTAAAGG AATTCTTTTG C           - #                  - #                       - #21                                                                    - -  - - (2) INFORMATION FOR SEQ ID NO: 13:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 2031 base - #pairs                                                 (B) TYPE: nucleic acid                                                         (C) STRANDEDNESS: double                                                       (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: DNA (genomic)                                      - -     (vi) ORIGINAL SOURCE:                                                           (A) ORGANISM: Borrelia - #burgdorferi                                          (B) STRAIN: B31                                                       - -     (ix) FEATURE:                                                                   (A) NAME/KEY: CDS                                                              (B) LOCATION: 14..1870                                                - -     (ix) FEATURE:                                                                   (A) NAME/KEY: sig.sub.-- - #peptide                                            (B) LOCATION: 14..76                                                  - -     (ix) FEATURE:                                                                   (A) NAME/KEY: mat.sub.-- - #peptide                                            (B) LOCATION: 77..1867                                                - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #13:                           - - GGAGGGTATA ATT ATG AAA AGC CAT ATT TTA TAT AA - #A TTA ATC ATA TTT             49                                                                                       Met Lys - #Ser His Ile Leu Tyr Lys Leu Ile Ile Phe                             -21 -20 - #                -15 - #                -10            - - TTA ACC ACA TCT GCA GCA ATA TTT GCA GCA GA - #C GCA TTA AAG GAA AAA            97                                                                        Leu Thr Thr Ser Ala Ala Ile Phe Ala Ala As - #p Ala Leu Lys Glu Lys                             -5 - #                  - #1               5                   - - GAT ATA TTT AAA ATA AAC CCA TGG ATG CCA AC - #A TTT GGA TTT GAA AAC           145                                                                        Asp Ile Phe Lys Ile Asn Pro Trp Met Pro Th - #r Phe Gly Phe Glu Asn                     10         - #         15         - #         20                       - - ACA AGT GAA TTC AGA TTA GAT ATG GAC GAG CT - #T GTT CCT GGG TTT GAA           193                                                                        Thr Ser Glu Phe Arg Leu Asp Met Asp Glu Le - #u Val Pro Gly Phe Glu                 25             - #     30             - #     35                           - - AAC AAA AGC AAA ATT ACC ATT AAG CTT AAA CC - #A TTT GAA GCT AAT CCC           241                                                                        Asn Lys Ser Lys Ile Thr Ile Lys Leu Lys Pr - #o Phe Glu Ala Asn Pro             40                 - # 45                 - # 50                 - # 55        - - GAA TTA GGC AAA GAC GAT CCA TTC TCA GCT TA - #C ATT AAG GTA GAA GAT           289                                                                        Glu Leu Gly Lys Asp Asp Pro Phe Ser Ala Ty - #r Ile Lys Val Glu Asp                             60 - #                 65 - #                 70               - - CTT GCA CTA AAA GCG GAA GGC AAA AAA GGC GA - #T CAA TTT AAA ATT GAC           337                                                                        Leu Ala Leu Lys Ala Glu Gly Lys Lys Gly As - #p Gln Phe Lys Ile Asp                         75     - #             80     - #             85                   - - GTG GGA GAT ATT ACA GCC CAA ATC AAT ATG TA - #C GAT TTT TTT ATT AAA           385                                                                        Val Gly Asp Ile Thr Ala Gln Ile Asn Met Ty - #r Asp Phe Phe Ile Lys                     90         - #         95         - #        100                       - - ATA AGT ACT ATG ACA GAT TTT GAC TTT AAT AA - #A GAG TCT TTA TTT AGT           433                                                                        Ile Ser Thr Met Thr Asp Phe Asp Phe Asn Ly - #s Glu Ser Leu Phe Ser                105              - #   110              - #   115                           - - TTT GCA CCT ATG ACT GGA TTT AAA AGC ACT TA - #C TAT GGA TTC CCA AGC           481                                                                        Phe Ala Pro Met Thr Gly Phe Lys Ser Thr Ty - #r Tyr Gly Phe Pro Ser            120                 1 - #25                 1 - #30                 1 -       #35                                                                               - - AAT GAT AGG GCA GTA AGA GGG ACA ATT CTT GC - #A AGA GGT ACT TCT         AAA      529                                                                     Asn Asp Arg Ala Val Arg Gly Thr Ile Leu Al - #a Arg Gly Thr Ser Lys                           140  - #               145  - #               150               - - AAC ATA GGA ACA ATT CAG CTG GGA TAC AAA CT - #C CCA AAA CTC GAC CTT           577                                                                        Asn Ile Gly Thr Ile Gln Leu Gly Tyr Lys Le - #u Pro Lys Leu Asp Leu                        155      - #           160      - #           165                   - - ACA TTT GCA ATA GGG GGA ACA GGC ACG GGT AA - #C AGA AAT CAA GAG AAT           625                                                                        Thr Phe Ala Ile Gly Gly Thr Gly Thr Gly As - #n Arg Asn Gln Glu Asn                    170          - #       175          - #       180                       - - GAC AAA GAC ACT CCA TAC AAT AAA ACA TAT CA - #A GGA ATC CTT TAT GGA           673                                                                        Asp Lys Asp Thr Pro Tyr Asn Lys Thr Tyr Gl - #n Gly Ile Leu Tyr Gly                185              - #   190              - #   195                           - - ATT CAA GCA ACA TGG AAA CCA ATA AAA AAT CT - #A CTT GAT CAA AAC GAA           721                                                                        Ile Gln Ala Thr Trp Lys Pro Ile Lys Asn Le - #u Leu Asp Gln Asn Glu            200                 2 - #05                 2 - #10                 2 -       #15                                                                               - - GAT ACT AAA TCT GTA ATT GCA GAA ACA CCT TT - #T GAA TTA AAT TTT         GGC      769                                                                     Asp Thr Lys Ser Val Ile Ala Glu Thr Pro Ph - #e Glu Leu Asn Phe Gly                           220  - #               225  - #               230               - - TTG TCA GGA GCC TAT GGA AAC GAG ACA TTC AA - #T AAT TCA TCA ATA ACA           817                                                                        Leu Ser Gly Ala Tyr Gly Asn Glu Thr Phe As - #n Asn Ser Ser Ile Thr                        235      - #           240      - #           245                   - - TAC TCT TTA AAA GAT AAA TCC GTA GTT GGC AA - #C GAT TTA TTG AGC CCA           865                                                                        Tyr Ser Leu Lys Asp Lys Ser Val Val Gly As - #n Asp Leu Leu Ser Pro                    250          - #       255          - #       260                       - - ACT TTA TCA AAT TCT GCA ATT TTA GCA TCT TT - #T GGA GCT AAA TAT AAG           913                                                                        Thr Leu Ser Asn Ser Ala Ile Leu Ala Ser Ph - #e Gly Ala Lys Tyr Lys                265              - #   270              - #   275                           - - CTT GGA TTA ACA AAA ATA AAC GAT AAA AAT AC - #C TAT CTT ATT TTG CAA           961                                                                        Leu Gly Leu Thr Lys Ile Asn Asp Lys Asn Th - #r Tyr Leu Ile Leu Gln            280                 2 - #85                 2 - #90                 2 -       #95                                                                               - - ATG GGA ACT GAT TTT GGA ATA GAT CCT TTT GC - #A AGC GAT TTT TCT         ATA     1009                                                                     Met Gly Thr Asp Phe Gly Ile Asp Pro Phe Al - #a Ser Asp Phe Ser Ile                           300  - #               305  - #               310               - - TTT GGA CAC ATC TCA AAA GCA GCG AAT TTC AA - #A AAA GAA ACA CCC TCA          1057                                                                        Phe Gly His Ile Ser Lys Ala Ala Asn Phe Ly - #s Lys Glu Thr Pro Ser                        315      - #           320      - #           325                   - - GAT CCT AAC AAA AAA GCT GAA ATA TTT GAT CC - #A AAT GGC AAT GCT CTT          1105                                                                        Asp Pro Asn Lys Lys Ala Glu Ile Phe Asp Pr - #o Asn Gly Asn Ala Leu                    330          - #       335          - #       340                       - - AAT TTC AGC AAA AAC ACA GAA TTG GGC ATT GC - #A TTT TCA ACA GGA GCA          1153                                                                        Asn Phe Ser Lys Asn Thr Glu Leu Gly Ile Al - #a Phe Ser Thr Gly Ala                345              - #   350              - #   355                           - - AGT ATA GGT TTT GCT TGG AAT AAA GAT ACC GG - #T GAA AAA GAA TCC TGG          1201                                                                        Ser Ile Gly Phe Ala Trp Asn Lys Asp Thr Gl - #y Glu Lys Glu Ser Trp            360                 3 - #65                 3 - #70                 3 -       #75                                                                               - - GCG ATT AAA GGA TCT GAT TCC TAC AGT ACA AG - #A CTC TTT GGA GAA         CAA     1249                                                                     Ala Ile Lys Gly Ser Asp Ser Tyr Ser Thr Ar - #g Leu Phe Gly Glu Gln                           380  - #               385  - #               390               - - GAC AAA AAA TCT GGA GTT GCA TTG GGA ATA AG - #C TAT GGA CAA AAC CTT          1297                                                                        Asp Lys Lys Ser Gly Val Ala Leu Gly Ile Se - #r Tyr Gly Gln Asn Leu                        395      - #           400      - #           405                   - - TAC AGA TCT AAA GAT ACA GAA AAA AGA TTA AA - #A ACC ATA TCT GAA AAT          1345                                                                        Tyr Arg Ser Lys Asp Thr Glu Lys Arg Leu Ly - #s Thr Ile Ser Glu Asn                    410          - #       415          - #       420                       - - GCA TTT CAA AGC TTA AAT GTT GAA ATT TCA AG - #C TAT GAA GAC AAC AAA          1393                                                                        Ala Phe Gln Ser Leu Asn Val Glu Ile Ser Se - #r Tyr Glu Asp Asn Lys                425              - #   430              - #   435                           - - AAA GGG ATT ATA AAT GGA TTA GGA TGG ATA AC - #A TCT ATC GGT CTT TAC          1441                                                                        Lys Gly Ile Ile Asn Gly Leu Gly Trp Ile Th - #r Ser Ile Gly Leu Tyr            440                 4 - #45                 4 - #50                 4 -       #55                                                                               - - GAT ATT TTA AGA CAA AAA TCT GTA GAA AAC TA - #T CCT ACA ACA ATT         TCA     1489                                                                     Asp Ile Leu Arg Gln Lys Ser Val Glu Asn Ty - #r Pro Thr Thr Ile Ser                           460  - #               465  - #               470               - - AGC ACC ACT GAA AAC AAT CAA ACT GAA CAA AG - #T TCA ACA AGC ACA AAG          1537                                                                        Ser Thr Thr Glu Asn Asn Gln Thr Glu Gln Se - #r Ser Thr Ser Thr Lys                        475      - #           480      - #           485                   - - ACC ACA ACC CCT AAT CTG ACA TTT GAA GAT GC - #A ATG AAA CTC GGC TTG          1585                                                                        Thr Thr Thr Pro Asn Leu Thr Phe Glu Asp Al - #a Met Lys Leu Gly Leu                    490          - #       495          - #       500                       - - GCC TTA TAT CTT GAT TAT GCA ATT CCA ATA GC - #A TCC ATT TCA ACA GAA          1633                                                                        Ala Leu Tyr Leu Asp Tyr Ala Ile Pro Ile Al - #a Ser Ile Ser Thr Glu                505              - #   510              - #   515                           - - GCA TAT GTA GTA CCT TAC ATT GGA GCA TAC AT - #T TTA GGA CCT TCT AAT          1681                                                                        Ala Tyr Val Val Pro Tyr Ile Gly Ala Tyr Il - #e Leu Gly Pro Ser Asn            520                 5 - #25                 5 - #30                 5 -       #35                                                                               - - AAA CTC TCA AGC GAT GCT ACA AAA ATT TAT TT - #A AAA ACA GGA CTT         AGC     1729                                                                     Lys Leu Ser Ser Asp Ala Thr Lys Ile Tyr Le - #u Lys Thr Gly Leu Ser                           540  - #               545  - #               550               - - CTT GAA AAA CTA ATA AGA TTT ACA ACA ATT TC - #T CTT GGA TGG GAT TCA          1777                                                                        Leu Glu Lys Leu Ile Arg Phe Thr Thr Ile Se - #r Leu Gly Trp Asp Ser                        555      - #           560      - #           565                   - - AAT AAC ATT ATA GAA CTT GCT AAT AAA AAC AC - #A AAT AAT GCT GCT ATT          1825                                                                        Asn Asn Ile Ile Glu Leu Ala Asn Lys Asn Th - #r Asn Asn Ala Ala Ile                    570          - #       575          - #       580                       - - GGA AGT GCT TTC TTG CAA TTC AAA ATA GCC TA - #C AGC GGA AGC              TAACAGCAAA  1877                                                                 Gly Ser Ala Phe Leu Gln Phe Lys Ile Ala Ty - #r Ser Gly Ser                        585              - #   590              - #   595                           - - AGAAGGGCTT TGGCCCTTCT TTTTTATCTT TAAAAACAAT TGGGATTACC TT -             #ATATTTCT   1937                                                                  - - TTCCTTGCAA ATTTTTTCAT AAGCATCTTG AATTTTTATA AATTTATCAT TT -             #GCATCTTT   1997                                                                  - - TTGTCTTACA GGATCATTTG CAAACTTATC AGGA       - #                  -      #      2031                                                                      - -  - - (2) INFORMATION FOR SEQ ID NO: 14:                                    - -      (i) SEQUENCE CHARACTERISTICS:                                                  (A) LENGTH: 618 amino - #acids                                                 (B) TYPE: amino acid                                                           (D) TOPOLOGY: linear                                                  - -     (ii) MOLECULE TYPE: protein                                            - -     (xi) SEQUENCE DESCRIPTION: SEQ ID NO: - #14:                           - - Met Lys Ser His Ile Leu Tyr Lys Leu Ile Il - #e Phe Leu Thr Thr Ser      21 -20                - # -15                - # -10                             - - Ala Ala Ile Phe Ala Ala Asp Ala Leu Lys Gl - #u Lys Asp Ile Phe Lys        -5                 - #  1               5 - #                 10               - - Ile Asn Pro Trp Met Pro Thr Phe Gly Phe Gl - #u Asn Thr Ser Glu Phe                    15     - #             20     - #             25                   - - Arg Leu Asp Met Asp Glu Leu Val Pro Gly Ph - #e Glu Asn Lys Ser Lys                30         - #         35         - #         40                       - - Ile Thr Ile Lys Leu Lys Pro Phe Glu Ala As - #n Pro Glu Leu Gly Lys            45             - #     50             - #     55                           - - Asp Asp Pro Phe Ser Ala Tyr Ile Lys Val Gl - #u Asp Leu Ala Leu Lys        60                 - # 65                 - # 70                 - # 75        - - Ala Glu Gly Lys Lys Gly Asp Gln Phe Lys Il - #e Asp Val Gly Asp Ile                        80 - #                 85 - #                 90               - - Thr Ala Gln Ile Asn Met Tyr Asp Phe Phe Il - #e Lys Ile Ser Thr Met                    95     - #            100     - #            105                   - - Thr Asp Phe Asp Phe Asn Lys Glu Ser Leu Ph - #e Ser Phe Ala Pro Met               110          - #       115          - #       120                       - - Thr Gly Phe Lys Ser Thr Tyr Tyr Gly Phe Pr - #o Ser Asn Asp Arg Ala           125              - #   130              - #   135                           - - Val Arg Gly Thr Ile Leu Ala Arg Gly Thr Se - #r Lys Asn Ile Gly Thr       140                 1 - #45                 1 - #50                 1 -       #55                                                                               - - Ile Gln Leu Gly Tyr Lys Leu Pro Lys Leu As - #p Leu Thr Phe Ala         Ile                                                                                              160  - #               165  - #               170              - - Gly Gly Thr Gly Thr Gly Asn Arg Asn Gln Gl - #u Asn Asp Lys Asp Thr                   175      - #           180      - #           185                   - - Pro Tyr Asn Lys Thr Tyr Gln Gly Ile Leu Ty - #r Gly Ile Gln Ala Thr               190          - #       195          - #       200                       - - Trp Lys Pro Ile Lys Asn Leu Leu Asp Gln As - #n Glu Asp Thr Lys Ser           205              - #   210              - #   215                           - - Val Ile Ala Glu Thr Pro Phe Glu Leu Asn Ph - #e Gly Leu Ser Gly Ala       220                 2 - #25                 2 - #30                 2 -       #35                                                                               - - Tyr Gly Asn Glu Thr Phe Asn Asn Ser Ser Il - #e Thr Tyr Ser Leu         Lys                                                                                              240  - #               245  - #               250              - - Asp Lys Ser Val Val Gly Asn Asp Leu Leu Se - #r Pro Thr Leu Ser Asn                   255      - #           260      - #           265                   - - Ser Ala Ile Leu Ala Ser Phe Gly Ala Lys Ty - #r Lys Leu Gly Leu Thr               270          - #       275          - #       280                       - - Lys Ile Asn Asp Lys Asn Thr Tyr Leu Ile Le - #u Gln Met Gly Thr Asp           285              - #   290              - #   295                           - - Phe Gly Ile Asp Pro Phe Ala Ser Asp Phe Se - #r Ile Phe Gly His Ile       300                 3 - #05                 3 - #10                 3 -       #15                                                                               - - Ser Lys Ala Ala Asn Phe Lys Lys Glu Thr Pr - #o Ser Asp Pro Asn         Lys                                                                                              320  - #               325  - #               330              - - Lys Ala Glu Ile Phe Asp Pro Asn Gly Asn Al - #a Leu Asn Phe Ser Lys                   335      - #           340      - #           345                   - - Asn Thr Glu Leu Gly Ile Ala Phe Ser Thr Gl - #y Ala Ser Ile Gly Phe               350          - #       355          - #       360                       - - Ala Trp Asn Lys Asp Thr Gly Glu Lys Glu Se - #r Trp Ala Ile Lys Gly           365              - #   370              - #   375                           - - Ser Asp Ser Tyr Ser Thr Arg Leu Phe Gly Gl - #u Gln Asp Lys Lys Ser       380                 3 - #85                 3 - #90                 3 -       #95                                                                               - - Gly Val Ala Leu Gly Ile Ser Tyr Gly Gln As - #n Leu Tyr Arg Ser         Lys                                                                                              400  - #               405  - #               410              - - Asp Thr Glu Lys Arg Leu Lys Thr Ile Ser Gl - #u Asn Ala Phe Gln Ser                   415      - #           420      - #           425                   - - Leu Asn Val Glu Ile Ser Ser Tyr Glu Asp As - #n Lys Lys Gly Ile Ile               430          - #       435          - #       440                       - - Asn Gly Leu Gly Trp Ile Thr Ser Ile Gly Le - #u Tyr Asp Ile Leu Arg           445              - #   450              - #   455                           - - Gln Lys Ser Val Glu Asn Tyr Pro Thr Thr Il - #e Ser Ser Thr Thr Glu       460                 4 - #65                 4 - #70                 4 -       #75                                                                               - - Asn Asn Gln Thr Glu Gln Ser Ser Thr Ser Th - #r Lys Thr Thr Thr         Pro                                                                                              480  - #               485  - #               490              - - Asn Leu Thr Phe Glu Asp Ala Met Lys Leu Gl - #y Leu Ala Leu Tyr Leu                   495      - #           500      - #           505                   - - Asp Tyr Ala Ile Pro Ile Ala Ser Ile Ser Th - #r Glu Ala Tyr Val Val               510          - #       515          - #       520                       - - Pro Tyr Ile Gly Ala Tyr Ile Leu Gly Pro Se - #r Asn Lys Leu Ser Ser           525              - #   530              - #   535                           - - Asp Ala Thr Lys Ile Tyr Leu Lys Thr Gly Le - #u Ser Leu Glu Lys Leu       540                 5 - #45                 5 - #50                 5 -       #55                                                                               - - Ile Arg Phe Thr Thr Ile Ser Leu Gly Trp As - #p Ser Asn Asn Ile         Ile                                                                                              560  - #               565  - #               570              - - Glu Leu Ala Asn Lys Asn Thr Asn Asn Ala Al - #a Ile Gly Ser Ala Phe                   575      - #           580      - #           585                   - - Leu Gln Phe Lys Ile Ala Tyr Ser Gly Ser                                           590          - #       595                                            __________________________________________________________________________ 

We claim:
 1. A method of preparing a polypeptide comprising:(a) inserting, in an expression vector, an isolated DNA molecule comprising a nucleotide sequence encoding the 66 KDa protein, the sequence being set forth in SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7 or SEQ ID NO:13; (b) transforming a host organism or a host cell with the expression vector; (c) culturing the transformed host cell under conditions facilitating the expression of the polypeptide by the host organism or host cell; and (d) harvesting the polypeptide.
 2. The method of claim 1, wherein the nucleotide sequence is set forth in SEQ ID NO:3.
 3. The method of claim 1, wherein the nucleotide sequence is set forth in SEQ ID NO:5.
 4. The method of claim 1, wherein the nucleotide sequence is set forth in SEQ ID NO:7.
 5. The method of claim 1, wherein the nucleotide sequence set forth in SEQ ID NO:13.
 6. The method of claim 1 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 7. The method of claim 6, wherein the expression vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 8. A method of preparing a polypeptide comprising:(a) inserting, in an expression vector, an isolated DNA molecule comprising a nucleotide sequence encoding the amino acid sequence set forth in SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:8, or SEQ ID NO:14; (b) transforming a host organism or a host cell with the expression vector; (c) culturing the transformed host cell under conditions facilitating the expression of the polypeptide by the host organism or host cell; and (d) harvesting the polypeptide.
 9. The method of claim 8 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 10. The method of claim 9, wherein the expression sector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 11. A method of preparing a polypeptide comprising:(a) inserting, in an expression vector, an isolated DNA molecule comprising a nucleotide sequence encoding the 66 KDa membrane protein of Borrelia Burgdorferi sensu stricto B31, Borrelia afzelli ACAI or Borrelia garinii IP90; (b) transforming a host organism or a host cell with the expression vector; (c) culturing the transformed host cell under conditions facilitating the expression of the polypeptide by the host organism or host cell; and (d) harvesting the polypeptide.
 12. The method of claim 11 further comprising the step of subjecting the polyp-peptide to post-translational modification(s).
 13. The method of claim 12, wherein the expression vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 14. A method of preparing a polypeptide comprising:(a) inserting, in an expression vector, an isolated DNA molecule coding for a polypeptide, wherein the polypeptide is selected from the group consisting of 175 to 190, 285 to 305, 365 to 385 and 465 to 490 from SEQ ID NOS: 4, 6, 8 and 14; (b) transforming a host organism or a host cell with the expression vector; (c) culturing the transformed host cell under conditions facilitating the expression of the polypeptide by the host organism or host cell; and (d) harvesting the polypeptide.
 15. The method of claim 14 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 16. The method of claim 15, wherein the expression vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 17. A method of preparing a polypeptide comprising: expressing the polypeptide from a rector, wherein the vector comprises an isolated DNA molecule comprising a nucleotide sentience encoding the 66 KDa protein, the sequence being set forth in SEQ ID NO:3, SEQ ID NO:5, SEQ ID NO:7 or SEQ ID NO:13.
 18. The method of claim 17, wherein the nucleotide sequence is set forth in SEQ ID NO:3.
 19. The method of claim 17, wherein the nucleotide sequence is set forth in SEQ ID NO:5.
 20. The method of claim 17, wherein the nucleotide sequence is set forth in SEQ ID NO:7.
 21. The method of claim 17, wherein the nucleotide sequence set forth in SEQ ID NO:13.
 22. The method of claim 17 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 23. The method of claim 22, wherein the vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 24. A method of preparing a polypeptide comprising: expressing the polypeptide from a vector, wherein the vector comprises an isolated DNA molecule encoding the amino acid sequence set forth in SEQ ID NO:4, SEQ ID NO:6, SEQ ID NO:8, or SEQ ID NO:14.
 25. The method of claim 24 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 26. The method of claim 25, wherein the vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 27. A method of preparing a polypeptide comprising: transforming a host cell to comprise a vector comprising an isolated DNA molecule comprising a nucleotide sequence encoding the 66 KDa membrane protein of Borrelia Burgdorferi sensu stricto B31, Borrelia afzelli ACAI or Borrelia garinii IP90; and expressing the polypeptide, wherein the polypeptide includes at least one epitope of the 66 kDa membrane protein.
 28. The method of claim 27 further comprising the step of subjecting the polypeptide to post-translational modifications(s).
 29. The method of claim 28, wherein the vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation.
 30. A method of preparing a polypeptide comprising: transforming a host cell with a vector comprising an isolated DNA molecule coding for a polypeptide wherein the polypeptide is selected from the group consisting of 175 to 190, 285 to 305, 35 to 385 and 465 to 490 from SEQ ID NOS: 4, 6, 8 and 14; and expressing the polypeptide, wherein polypeptide includes at least one epitope of the 66 kDa membrane protein.
 31. The method of claim 30 further comprising the step of subjecting the polypeptide to post-translational modification(s).
 32. The method of claim 31, wherein the vector is selected from the group consisting of a plasmid, a cosmid, a minichromosome and a phage; the host cell is selected from the group consisting of a bacterium, a yeast, a protozoan, a fungus, an insect sell, a plant cell and a mammalian cell; and the post-translational modifications involves lipidation or glycosylation. 